[1] "2025-04-29 22:21:25 MDT" [1] "1410" "141105" "d309" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141105a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:21:29 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.843, ave o2scale2 = 0.759" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "14 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.843, ave o2scale2 = 0.759" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "14 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:21:30 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:21:30 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:21:49 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:21:51 MDT" [1] "reading in recalculated plot titles" [1] "Removed 14 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1422 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:21:57 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.4" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 413.59 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 8.19 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 4 2 229 237 0.1605278 0.1661042 0.1640127 3 -25.648554 529.0509 5 4 238 247 0.1667998 0.1730628 0.1706268 3 3.591359 383.5216 6 3 248 256 0.1737581 0.1793218 0.1786263 3 -6.208777 455.6196 8 4 525 533 0.3693760 0.3749433 0.3728546 2 3.634652 380.6474 9 2 534 542 0.3756389 0.3812026 0.3791163 2 -25.607116 529.7145 12 2 821 829 0.5781316 0.5836991 0.5816121 3 -25.643018 528.4268 13 4 830 838 0.5843947 0.5899618 0.5878724 3 3.594946 384.5681 15 3 848 857 0.5983160 0.6045789 0.6035359 3 -6.207508 462.2615 17 4 1116 1125 0.7861960 0.7924676 0.7900260 2 3.561672 380.9865 18 2 1126 1135 0.7931631 0.7994259 0.7969902 2 -25.687898 530.8833 21 2 1416 1422 0.9949202 0.9990972 0.9977031 1 -25.719788 525.1070 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 4 1.186000 1.316887 2.535381e-05 0.73640754 0.002889553 4.788092 5 1.185940 1.316920 6.826779e-04 -0.57134930 0.004711753 2.566986 6 1.185951 1.317153 1.874548e-03 -5.32087063 0.005041218 5.348524 8 1.187764 1.318666 1.291758e-03 -1.70904910 0.004345265 4.364396 9 1.187761 1.318857 -4.362173e-03 0.71527267 0.010057156 2.634976 12 1.187639 1.318491 -3.152793e-05 1.12300167 0.002166781 3.162552 13 1.187253 1.318231 2.505589e-03 1.70660218 0.007265826 4.574986 15 1.187182 1.318056 -1.125405e-03 -1.59556491 0.003588088 2.324288 17 1.187127 1.318019 2.084383e-04 0.07622896 0.001901524 2.881744 18 1.187177 1.318079 -5.894718e-04 -0.04000152 0.009460145 2.146516 21 1.185025 1.315960 -1.513757e-03 1.35716241 0.003631890 2.380543 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 400.853 co2l1 = 0.944 co2l0 = 0.001" [1] "co2l0 = -195.85 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "72 out of 255 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "183 out of 1272 1-min values rejected as stack air" [1] "156 out of 1027 Line 1 1-min values rejected as stack air" [1] "27 out of 245 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"