[1] "2025-04-29 22:20:15 MDT" [1] "1410" "141103" "d307" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141103a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86100 63 [1] 86100 [1] 86100 [1] "testing skipping spike filter" [1] 86100 [1] 86100 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:20:19 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.859, ave o2scale2 = 0.774" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "41 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.859, ave o2scale2 = 0.774" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "43 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:20:20 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:20:20 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:20:38 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:20:40 MDT" [1] "reading in recalculated plot titles" [1] "Removed 43 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1391 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:20:44 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.4" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 395.63 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.03 minutes" [1] "Average Cal: 8.03 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.05 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 90 97 0.07322859 0.07879251 0.07670608 3 -25.778872 523.6308 3 4 98 106 0.07948782 0.08505521 0.08296773 3 3.488321 381.9780 5 3 115 122 0.09410408 0.09897338 0.09862558 3 -6.335688 449.2420 7 4 378 386 0.28201100 0.28757818 0.28549134 2 3.551536 378.5859 8 2 387 395 0.28827347 0.29384112 0.29175430 2 -25.720911 534.3015 10 2 674 682 0.49093293 0.49651126 0.49441938 3 -25.738313 526.5091 11 4 683 692 0.49720877 0.50349575 0.50105528 3 3.527438 383.8787 12 3 693 701 0.50419427 0.50977451 0.50907761 3 -6.259902 460.0149 14 4 969 977 0.69955145 0.70513351 0.70304036 2 3.507545 383.4988 15 2 978 986 0.70583122 0.71141212 0.70931967 2 -25.766384 525.3976 18 2 1262 1270 0.90818840 0.91377946 0.91168598 3 -25.868625 533.6872 19 4 1271 1280 0.91447685 0.92075926 0.91831756 3 3.399016 382.3977 20 3 1281 1289 0.92145683 0.92703359 0.92633616 3 -6.404348 460.5263 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.161042 1.288220 -0.0011010125 4.56703225 0.002817480 12.186724 3 1.160887 1.287591 -0.0006494255 -4.30583348 0.005561965 10.898506 5 1.160347 1.287403 0.0012622613 1.86449635 0.003434430 1.320595 7 1.167125 1.295194 -0.0004291083 2.13312685 0.003832743 5.212763 8 1.167310 1.295221 -0.0026188897 0.36838134 0.008010642 4.238720 10 1.166434 1.294541 -0.0016249872 0.25634410 0.003625000 1.188481 11 1.166417 1.294424 0.0023799512 0.06078733 0.007432058 2.292678 12 1.166548 1.294375 0.0008061599 -1.59428582 0.003006472 1.600946 14 1.164938 1.292793 -0.0014291950 -2.00122258 0.004856497 10.485921 15 1.164792 1.292836 -0.0033217387 0.55338780 0.008964879 4.739765 18 1.163014 1.290717 0.0004809946 1.31100024 0.003792640 6.320067 19 1.162916 1.290486 0.0035054967 0.85744424 0.009506973 6.075267 20 1.162989 1.290441 -0.0002047389 0.56197797 0.003654666 1.414011 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 400.939 co2l1 = 0.943 co2l0 = 0" [1] "co2l0 = -196.58 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "39 out of 40 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "1 out of 1200 1-min values rejected as stack air" [1] "1 out of 1200 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"