[1] "2025-04-29 22:18:10 MDT" [1] "1410" "141030" "d303" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141030a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:18:14 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.835, ave o2scale2 = 0.753" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "49 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.835, ave o2scale2 = 0.753" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "51 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:18:14 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:18:14 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:18:33 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:18:34 MDT" [1] "reading in recalculated plot titles" [1] "Removed 51 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1385 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:18:39 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.4" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 400.02 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.07 minutes" [1] "Average Cal: 8.36 minutes" [1] "Shortest Cal: 7.02 minutes" [1] "Longest Cal: 9.07 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 17 25 0.01457529 0.02017818 0.01807823 3 -24.786902 530.3223 3 4 26 35 0.02087847 0.02717946 0.02472925 3 4.474109 382.4289 4 3 36 44 0.02787963 0.03348154 0.03278449 3 -5.323205 459.8735 6 4 307 316 0.22272882 0.22899158 0.22655694 2 4.430672 376.5105 7 2 317 326 0.22968692 0.23594986 0.23351570 2 -24.821969 531.0869 10 2 586 595 0.43152257 0.43778241 0.43534818 3 -24.760820 529.5672 11 4 596 604 0.43918900 0.44475694 0.44266709 3 4.454241 379.2281 12 3 605 613 0.44545255 0.45101979 0.45032296 3 -5.343527 460.7559 14 4 878 886 0.64101244 0.64657989 0.64449297 2 4.472848 383.7087 15 2 887 896 0.64727546 0.65353819 0.65110400 2 -24.762641 528.4011 17 2 1175 1183 0.84979384 0.85536146 0.85327481 3 -24.741893 530.9608 18 4 1184 1193 0.85605692 0.86232025 0.85988495 3 4.507070 376.0255 20 3 1202 1209 0.87066979 0.87554167 0.87519400 3 -5.269479 463.0307 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.188346 1.315340 7.548361e-05 0.6197054 0.003334998 2.0913433 3 1.188231 1.315333 2.697138e-03 0.4004759 0.007419866 2.3308429 4 1.188395 1.315718 2.042171e-05 -0.9153481 0.003737081 0.9265177 6 1.190729 1.318989 1.860131e-04 -3.8795120 0.002961575 9.9876410 7 1.190839 1.319124 -4.374356e-03 -0.2157124 0.012545498 6.0049767 10 1.198618 1.329343 -3.058787e-03 1.5880168 0.007709025 5.3560696 11 1.198579 1.329233 -6.910514e-04 -0.9129835 0.003282575 3.7812397 12 1.198949 1.329950 -7.395575e-04 -3.5941835 0.004079110 3.8813779 14 1.202820 1.334396 -1.458477e-03 -2.2964849 0.003566857 5.4599763 15 1.202986 1.334655 -1.193738e-03 0.4211726 0.005099102 1.7155433 17 1.207656 1.339669 2.305301e-03 -0.7427611 0.005388998 10.6208953 18 1.207802 1.339932 2.887805e-03 1.2537287 0.007665760 7.7358457 20 1.208543 1.340797 -3.596108e-04 -0.6444040 0.000831665 0.4562510 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 400.015 co2l1 = 0.944 co2l0 = 0.001" [1] "co2l0 = -194.13 co2l1 = 0.212" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "45 out of 45 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1189 1-min values rejected as stack air" [1] "0 out of 1189 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"