[1] "2017-04-06 17:08:15 MDT"
[1] "1410"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1410/141028.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1410/141029.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1410/141030.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1410/141031.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1410/141101.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1410/141102.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1410/141103.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1410/141104.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1410/141105.html"  
[10] "/net/www/docs/homes/stephens/GO2/1410/141106.html"  
[11] "/net/www/docs/homes/stephens/GO2/1410/141107.html"  
[12] "/net/www/docs/homes/stephens/GO2/1410/141108.html"  
[13] "/net/www/docs/homes/stephens/GO2/1410/141109.html"  
[14] "/net/www/docs/homes/stephens/GO2/1410/141110.html"  
[15] "/net/www/docs/homes/stephens/GO2/1410/141111.html"  
[16] "/net/www/docs/homes/stephens/GO2/1410/141112.html"  
[17] "/net/www/docs/homes/stephens/GO2/1410/141113.html"  
[18] "/net/www/docs/homes/stephens/GO2/1410/141114.html"  
[19] "/net/www/docs/homes/stephens/GO2/1410/141115.html"  
[20] "/net/www/docs/homes/stephens/GO2/1410/141116.html"  
[21] "/net/www/docs/homes/stephens/GO2/1410/141117.html"  
[22] "/net/www/docs/homes/stephens/GO2/1410/141118.html"  
[23] "/net/www/docs/homes/stephens/GO2/1410/141119.html"  
[24] "/net/www/docs/homes/stephens/GO2/1410/141120.html"  
[25] "/net/www/docs/homes/stephens/GO2/1410/141121.html"  
[26] "/net/www/docs/homes/stephens/GO2/1410/141122.html"  
[27] "/net/www/docs/homes/stephens/GO2/1410/lmg_1410.html"
 [1] "/net/www/docs/homes/stephens/GO2/1410/141028.html"
 [2] "/net/www/docs/homes/stephens/GO2/1410/141029.html"
 [3] "/net/www/docs/homes/stephens/GO2/1410/141030.html"
 [4] "/net/www/docs/homes/stephens/GO2/1410/141031.html"
 [5] "/net/www/docs/homes/stephens/GO2/1410/141101.html"
 [6] "/net/www/docs/homes/stephens/GO2/1410/141102.html"
 [7] "/net/www/docs/homes/stephens/GO2/1410/141103.html"
 [8] "/net/www/docs/homes/stephens/GO2/1410/141104.html"
 [9] "/net/www/docs/homes/stephens/GO2/1410/141105.html"
[10] "/net/www/docs/homes/stephens/GO2/1410/141106.html"
[11] "/net/www/docs/homes/stephens/GO2/1410/141107.html"
[12] "/net/www/docs/homes/stephens/GO2/1410/141108.html"
[13] "/net/www/docs/homes/stephens/GO2/1410/141109.html"
[14] "/net/www/docs/homes/stephens/GO2/1410/141110.html"
[15] "/net/www/docs/homes/stephens/GO2/1410/141111.html"
[16] "/net/www/docs/homes/stephens/GO2/1410/141112.html"
[17] "/net/www/docs/homes/stephens/GO2/1410/141113.html"
[18] "/net/www/docs/homes/stephens/GO2/1410/141114.html"
[19] "/net/www/docs/homes/stephens/GO2/1410/141115.html"
[20] "/net/www/docs/homes/stephens/GO2/1410/141116.html"
[21] "/net/www/docs/homes/stephens/GO2/1410/141117.html"
[22] "/net/www/docs/homes/stephens/GO2/1410/141118.html"
[23] "/net/www/docs/homes/stephens/GO2/1410/141119.html"
[24] "/net/www/docs/homes/stephens/GO2/1410/141120.html"
[25] "/net/www/docs/homes/stephens/GO2/1410/141121.html"
[26] "/net/www/docs/homes/stephens/GO2/1410/141122.html"
[1] "141028" "141122"
 [1] "141028" "141029" "141030" "141031" "141101" "141102" "141103" "141104"
 [9] "141105" "141106" "141107" "141108" "141109" "141110" "141111" "141112"
[17] "141113" "141114" "141115" "141116" "141117" "141118" "141119" "141120"
[25] "141121" "141122"
[1] "000000" "999999"
[1] "141028_mr_proc.txt, 141028_cal_periods.txt, 141028_cal_param.txt,840jogs"
[1] "141029_mr_proc.txt, 141029_cal_periods.txt, 141029_cal_param.txt,1394jogs"
[1] "141030_mr_proc.txt, 141030_cal_periods.txt, 141030_cal_param.txt,1385jogs"
[1] "141031_mr_proc.txt, 141031_cal_periods.txt, 141031_cal_param.txt,1315jogs"
[1] "141101_mr_proc.txt, 141101_cal_periods.txt, 141101_cal_param.txt,1149jogs"
[1] "141102_mr_proc.txt, 141102_cal_periods.txt, 141102_cal_param.txt,1360jogs"
[1] "141103_mr_proc.txt, 141103_cal_periods.txt, 141103_cal_param.txt,1391jogs"
[1] "141104_mr_proc.txt, 141104_cal_periods.txt, 141104_cal_param.txt,1389jogs"
[1] "141105_mr_proc.txt, 141105_cal_periods.txt, 141105_cal_param.txt,1422jogs"
[1] "141106_mr_proc.txt, 141106_cal_periods.txt, 141106_cal_param.txt,1405jogs"
[1] "141107_mr_proc.txt, 141107_cal_periods.txt, 141107_cal_param.txt,1408jogs"
[1] "141108_mr_proc.txt, 141108_cal_periods.txt, 141108_cal_param.txt,1435jogs"
[1] "141109_mr_proc.txt, 141109_cal_periods.txt, 141109_cal_param.txt,1404jogs"
[1] "141110_mr_proc.txt, 141110_cal_periods.txt, 141110_cal_param.txt,1075jogs"
[1] "141111_mr_proc.txt, 141111_cal_periods.txt, 141111_cal_param.txt,1164jogs"
[1] "141112_mr_proc.txt, 141112_cal_periods.txt, 141112_cal_param.txt,1253jogs"
[1] "141113_mr_proc.txt, 141113_cal_periods.txt, 141113_cal_param.txt,1424jogs"
[1] "141114_mr_proc.txt, 141114_cal_periods.txt, 141114_cal_param.txt,1434jogs"
[1] "141115_mr_proc.txt, 141115_cal_periods.txt, 141115_cal_param.txt,1434jogs"
[1] "141116_mr_proc.txt, 141116_cal_periods.txt, 141116_cal_param.txt,1401jogs"
[1] "141117_mr_proc.txt, 141117_cal_periods.txt, 141117_cal_param.txt,1323jogs"
[1] "141118_mr_proc.txt, 141118_cal_periods.txt, 141118_cal_param.txt,1430jogs"
[1] "141119_mr_proc.txt, 141119_cal_periods.txt, 141119_cal_param.txt,1366jogs"
[1] "141120_mr_proc.txt, 141120_cal_periods.txt, 141120_cal_param.txt,1298jogs"
[1] "141121_mr_proc.txt, 141121_cal_periods.txt, 141121_cal_param.txt,1269jogs"
[1] "141122_mr_proc.txt, 141122_cal_periods.txt, 141122_cal_param.txt,307jogs"
[1] "141028" "141122" "d301"   "d326"  
[1] "Calculating derived concentration values"
[1] "2017-04-06 17:09:43 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.763"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-06 17:10:12 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-06 17:10:57 MDT"
[1] "2017-04-06 17:11:08 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 376.46 O2 = -483.2"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.8 O2 = -548.3"
[1] "position 3 cylinder CC339490 description: LS CO2 = 404.04 O2 = -642.6"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.91 O2 = -579.2"
[1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1410 Valve transient for  Line 1 after Line 2 = -0.17 , -0.12 , -0.01 , 0.07 , 0.08 n = 5"
[1] "1410 Valve transient for  Line 1 after Cal = -0.15 , -0.1 , -0.04 , -0.01 , -0.01 n = 79"
[1] "1410 Valve transient for  Line 2 after Line 1 = 0.09 , 0.09 , 0.08 , 0.07 , 0.06 n = 3"
[1] "1410 Valve transient for  Line 2 after Cal = -1.26 , -0.94 , -0.62 , -0.38 , 0.27 n = 2"
[1] "1410 Valve transient for  Line 1 after HS = -1.07 , -0.46 , -0.04 , -0.05 , -0.05 n = 26"
[1] "1410 Valve transient for  Line 1 after MS = -0.05 , 0 , 0.01 , 0.01 , 0.02 n = 39"
[1] "1410 Valve transient for  Line 1 after LT = -2.29 , -1.73 , -0.58 , -0.02 , 0.06 n = 14"
[1] "1410 Valve transient for  Line 2 after HS = -1.26 , -0.94 , -0.62 , -0.38 , 0.27 n = 2"
[1] "1410 Valve transient for  Line 2 after MS = 0.1 , 0.14 , 0.17 , 0.16 , 0.15 n = 1"
[1] "1410 Valve transient for  HS after Line 1 = 0.97 , 0.49 , 0 , 0 , 0 n = 23"
[1] "1410 Valve transient for  HS after MS = 2.93 , 1.47 , 0.02 , 0.01 , 0.01 n = 1"
[1] "1410 Valve transient for  HS after LS = 4.3 , 2.16 , 0.02 , 0.01 , 0 n = 23"
[1] "1410 Valve transient for  MS after Line 1 = 0 , 0 , 0 , 0 , NA n = 1"
[1] "1410 Valve transient for  MS after LS = 1.44 , 0.73 , 0.01 , 0 , 0 n = 16"
[1] "1410 Valve transient for  MS after LT = 0.85 , 0.43 , 0.01 , 0 , 0 n = 7"
[1] "1410 Valve transient for  LS after Line 1 = -1.29 , -0.65 , 0 , 0 , 0 n = 18"
[1] "1410 Valve transient for  LS after Line 2 = -0.01 , 0 , 0 , 0 , 0 n = 2"
[1] "1410 Valve transient for  LS after HS = -4.31 , -2.16 , -0.01 , 0 , 0 n = 33"
[1] "1410 Valve transient for  LT after HS = -0.97 , -0.46 , 0.05 , 0.04 , 0.04 n = 9"
[1] "1410 Valve transient for  LT after LS = 0.68 , 0.37 , 0.05 , 0.04 , 0.03 n = 7"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "994 out of 6225 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "5231 out of 29022 1-min values rejected as stack air"
[1] "4968 out of 27169 Line 1 1-min values rejected as stack air"
[1] "263 out of 1853 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1410loxy.d301"
[1] "LMG1410loxy.d302"
[1] "LMG1410loxy.d303"
[1] "LMG1410loxy.d304"
[1] "LMG1410loxy.d305"
[1] "LMG1410loxy.d307"
[1] "LMG1410loxy.d308"
[1] "LMG1410loxy.d309"
[1] "LMG1410loxy.d310"
[1] "LMG1410loxy.d311"
[1] "LMG1410loxy.d312"
[1] "LMG1410loxy.d313"
[1] "LMG1410loxy.d314"
[1] "LMG1410loxy.d315"
[1] "LMG1410loxy.d316"
[1] "LMG1410loxy.d317"
[1] "LMG1410loxy.d318"
[1] "LMG1410loxy.d319"
[1] "LMG1410loxy.d320"
[1] "LMG1410loxy.d321"
[1] "LMG1410loxy.d322"
[1] "LMG1410loxy.d323"
[1] "LMG1410loxy.d324"
[1] "LMG1410loxy.d325"
[1] "LMG1410loxy.d326"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.3780718
 [2,]  97.5 0.7561437
 [3,] 102.5 0.7561437
 [4,] 107.5 1.5122873
 [5,] 112.5 1.8903592
 [6,] 117.5 0.7561437
 [7,] 122.5 0.7561437
 [8,] 127.5 1.1342155
 [9,] 132.5 1.5122873
[10,] 137.5 1.3232514
[11,] 142.5 0.9451796
[12,] 147.5 0.1890359
[13,] 152.5 0.7561437
[14,] 157.5 0.3780718
[15,] 162.5 0.1890359
[16,] 167.5 0.3780718
[17,] 172.5 0.3780718
[18,] 182.5 0.1890359
[19,] 247.5 0.1890359
[20,] 252.5 0.5671078
[21,] 257.5 0.5671078
[22,] 262.5 0.1890359
[23,] 267.5 0.7561437
[24,] 272.5 0.1890359
[25,] 277.5 0.3780718
[26,] 287.5 0.1890359
[27,] 292.5 0.5671078
[28,] 297.5 0.9451796
[29,] 302.5 0.5671078
[30,] 307.5 0.1890359
[31,] 312.5 0.5671078
[32,] 317.5 0.1890359
[33,] 322.5 0.1890359
[34,] 327.5 0.3780718
[35,] 332.5 0.3780718
[36,] 342.5 0.1890359
[37,] 352.5 0.3780718
[38,] 367.5 0.5671078
[39,] 372.5 0.1890359
[40,] 377.5 0.1890359
[41,] 382.5 0.1890359
[42,] 387.5 0.3780718
[43,] 392.5 0.3780718
[44,] 397.5 0.5671078
[45,] 402.5 0.1890359
[46,] 407.5 0.3780718
[47,] 422.5 0.5671078
[48,] 427.5 0.1890359
[49,] 432.5 0.1890359
[50,] 437.5 0.3780718
[51,] 442.5 0.3780718
[52,] 447.5 0.1890359
       [,1]      [,2]
 [1,]  92.5 0.9451796
 [2,]  97.5 1.3232514
 [3,] 102.5 1.5122873
 [4,] 107.5 1.5122873
 [5,] 112.5 0.7561437
 [6,] 117.5 0.5671078
 [7,] 122.5 0.1890359
 [8,] 127.5 1.5122873
 [9,] 132.5 0.7561437
[10,] 137.5 0.3780718
[11,] 142.5 0.1890359
[12,] 147.5 0.3780718
[13,] 152.5 0.1890359
[14,] 227.5 0.1890359
[15,] 242.5 0.1890359
[16,] 247.5 0.1890359
[17,] 252.5 0.3780718
[18,] 257.5 0.1890359
[19,] 262.5 0.1890359
[20,] 267.5 0.1890359
[21,] 272.5 0.3780718
[22,] 277.5 0.9451796
[23,] 282.5 0.9451796
[24,] 287.5 0.7561437
[25,] 292.5 0.7561437
[26,] 297.5 0.5671078
[27,] 302.5 0.3780718
[28,] 307.5 2.2684310
[29,] 312.5 1.7013233
[30,] 317.5 1.5122873
[31,] 322.5 1.3232514
[32,] 327.5 0.3780718
[33,] 332.5 0.7561437
[34,] 337.5 0.1890359
[35,] 362.5 0.1890359
[36,] 372.5 0.1890359
[37,] 377.5 0.1890359
[38,] 382.5 0.1890359
[39,] 387.5 0.3780718
[40,] 412.5 0.3780718
[41,] 422.5 0.1890359
[42,] 432.5 0.3780718
[43,] 442.5 0.1890359
[44,] 447.5 0.9451796
       [,1]      [,2]
 [1,]  92.5 1.3232514
 [2,]  97.5 1.7013233
 [3,] 102.5 2.6465028
 [4,] 107.5 0.9451796
 [5,] 112.5 0.1890359
 [6,] 117.5 0.0000000
 [7,] 132.5 0.1890359
 [8,] 277.5 0.7561437
 [9,] 282.5 1.5122873
[10,] 287.5 0.1890359
[11,] 297.5 0.3780718
[12,] 302.5 0.3780718
[13,] 307.5 0.3780718
[14,] 312.5 1.3232514
[15,] 317.5 1.3232514
[16,] 322.5 2.2684310
[17,] 327.5 3.5916824
[18,] 332.5 0.9451796
[19,] 342.5 0.1890359
[20,] 422.5 0.1890359
[21,] 427.5 0.1890359
[22,] 432.5 0.1890359
[23,] 437.5 0.3780718
[24,] 442.5 0.1890359
[25,] 447.5 0.7561437
       [,1]      [,2]
 [1,]  97.5 0.1890359
 [2,] 102.5 0.3780718
 [3,] 107.5 0.3780718
 [4,] 112.5 0.3780718
 [5,] 132.5 0.1890359
 [6,] 267.5 0.1890359
 [7,] 272.5 1.1342155
 [8,] 277.5 1.1342155
 [9,] 282.5 0.3780718
[10,] 287.5 0.5671078
[11,] 292.5 0.1890359
[12,] 297.5 0.1890359
[13,] 302.5 0.7561437
[14,] 307.5 0.7561437
[15,] 312.5 3.4026465
[16,] 317.5 0.9451796
[17,] 322.5 2.0793951
[18,] 327.5 3.7807183
[19,] 332.5 3.5916824
[20,] 337.5 1.3232514
[21,] 347.5 0.0000000
[22,] 352.5 0.1890359
[23,] 357.5 0.0000000
[24,] 372.5 0.3780718
[25,] 382.5 0.5671078
[26,] 387.5 0.3780718
[1] "making cruise html"
[1] "2017-04-06 17:12:09 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"