[1] "2025-04-29 22:15:58 MDT" [1] "1409" "141020" "d293" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141020a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 72884 63 [1] 72884 [1] 72884 [1] "testing skipping spike filter" [1] 72884 [1] 72884 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:16:02 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.821, ave o2scale2 = 0.74" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "43 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.821, ave o2scale2 = 0.74" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "42 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:16:02 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:16:02 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:16:18 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:16:19 MDT" [1] "reading in recalculated plot titles" [1] "Removed 43 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1171 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:16:24 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.1" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.4" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.491 co2off = 398.55 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.83 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 117 126 0.09987069 0.1061342 0.1036974 3 -54.235898 522.4309 3 4 127 136 0.10682951 0.1130891 0.1106547 3 2.067719 383.3582 4 3 137 146 0.11378475 0.1200441 0.1190007 3 -17.003406 464.2628 6 4 408 417 0.30858333 0.3148462 0.3124101 2 1.908055 379.5213 7 2 418 425 0.31693287 0.3218016 0.3200626 2 -54.430615 525.5329 8 5 426 435 0.32249682 0.3287569 0.3277132 NA -19.170687 441.6742 10 2 702 711 0.51726259 0.5235255 0.5210906 3 -54.562508 530.4191 11 4 712 721 0.52422072 0.5304837 0.5280495 3 1.682852 382.5116 12 3 722 731 0.53117908 0.5374387 0.5363953 3 -17.391984 456.8278 14 4 1001 1010 0.72595648 0.7322199 0.7297847 2 1.571602 385.0371 15 2 1011 1020 0.73291551 0.7391743 0.7367402 2 -54.674242 525.4871 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.227780 1.361979 -0.0058512222 -0.1467849 0.016779456 7.004267 3 1.227922 1.362104 0.0063898276 0.6665374 0.016730366 2.223637 4 1.227730 1.361906 -0.0011574353 -2.0740234 0.005263694 4.403245 6 1.222044 1.355387 -0.0008969058 1.5853976 0.010134775 4.838065 7 1.221610 1.354856 -0.0102782115 -1.5039950 0.019701460 3.555289 8 1.221502 1.354573 -0.0078534031 -3.0232649 0.005568466 4.005531 10 1.215114 1.347701 0.0010607958 1.8196144 0.003031906 6.034491 11 1.214779 1.347335 0.0028000688 -0.4117631 0.009099398 3.169516 12 1.214495 1.347001 -0.0005881815 -3.1656931 0.008772595 4.554157 14 1.211561 1.343543 -0.0001162807 -0.4176004 0.011317010 1.936621 15 1.211621 1.343651 -0.0023944959 -0.2288449 0.008953902 2.784023 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.37 co2l1 = 0.491 co2l0 = -0.032" [1] "co2l0 = -198.73 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "10 out of 10 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1016 1-min values rejected as stack air" [1] "0 out of 1016 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"