[1] "2025-04-29 22:10:07 MDT" [1] "1409" "141009" "d282" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141009a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84649 63 [1] 84649 [1] 84649 [1] "testing skipping spike filter" [1] 84649 [1] 84649 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:10:11 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.854, ave o2scale2 = 0.768" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "66 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.854, ave o2scale2 = 0.768" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 3 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "66 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:10:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:10:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:10:19 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:10:20 MDT" [1] "reading in recalculated plot titles" [1] "Removed 66 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 953 row(s) with low FLSP" [1] "Removed 7 row(s) with variable TFCELL" [1] "TEMP: 382 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:10:22 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.1" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.5" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.48 co2off = 379.88 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 46.75 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 299.8 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 7 [4,] 8 9 [5,] 10 10 [6,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 9 0.00653125 0.01209499 0.01000864 3 -33.501196 283.9640 2 4 10 18 0.01279062 0.01835440 0.01626824 3 24.128455 143.4937 3 3 19 26 0.02739931 0.03227199 0.03192419 3 4.574531 213.5884 4 4 27 35 0.21526039 0.22082792 0.21874000 2 23.880009 142.2146 5 2 36 53 0.22152332 0.42971652 0.33859639 2 -33.824359 283.5867 6 4 54 63 0.43041204 0.43667138 0.43423704 2 23.623820 140.1363 7 3 64 72 0.43736670 0.44293056 0.44223506 2 4.113625 218.1126 8 4 73 79 0.63294323 0.63711944 0.63572789 2 23.611675 140.8724 9 2 80 91 0.63920602 0.79110417 0.68700316 2 -33.917156 281.8129 10 4 92 101 0.79249916 0.79876389 0.79632819 1 23.706344 135.6428 11 5 102 111 0.79945926 0.80572225 0.80467800 NA 1.941125 179.7416 13 4 364 373 0.98720266 0.99348501 0.99104591 2 23.795258 141.6907 14 2 374 382 0.99418058 0.99974433 0.99765813 2 -33.755598 282.5419 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.183293 1.314587 -0.0044067879 -0.727766263 0.010229173 3.71214409 2 1.182890 1.314180 0.0024543182 0.855156893 0.009494976 5.73463250 3 1.182516 1.313833 0.0024583048 0.069531400 0.007412695 0.04924807 4 1.175641 1.305950 0.0050009740 -0.632684828 0.012623269 2.40103744 5 1.171163 1.300926 -0.0008971810 0.006512136 0.135626512 4.08956235 6 1.167590 1.296898 0.0022798977 -0.121256610 0.013390447 3.61616825 7 1.167366 1.296740 -0.0030851015 -3.527508008 0.007345190 3.53289817 8 1.167289 1.296567 0.0011624391 0.503256396 0.004209689 5.81441947 9 1.168346 1.297709 0.0004235809 -0.025771344 0.046841824 9.24779250 10 1.170756 1.300796 0.0051803076 2.930917485 0.013983129 16.93459257 11 1.171331 1.301064 0.0019965892 0.367282168 0.001414214 9.37308725 13 1.176175 1.306805 0.0007261872 0.703318264 0.006376176 3.40698638 14 1.176772 1.307412 0.0007887916 -0.715297605 0.013169807 2.23039230 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 392.857 co2l1 = 0.479 co2l0 = 0.092" [1] "co2l0 = -145.4 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 232 1-min values rejected as stack air" [1] "0 out of 232 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"