[1] "2017-04-06 12:14:49 MDT"
[1] "1409"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1409/141007.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1409/141008.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1409/141009.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1409/141010.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1409/141011.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1409/141012.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1409/141013.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1409/141014.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1409/141015.html"  
[10] "/net/www/docs/homes/stephens/GO2/1409/141016.html"  
[11] "/net/www/docs/homes/stephens/GO2/1409/141017.html"  
[12] "/net/www/docs/homes/stephens/GO2/1409/141018.html"  
[13] "/net/www/docs/homes/stephens/GO2/1409/141019.html"  
[14] "/net/www/docs/homes/stephens/GO2/1409/141020.html"  
[15] "/net/www/docs/homes/stephens/GO2/1409/lmg_1409.html"
 [1] "/net/www/docs/homes/stephens/GO2/1409/141007.html"
 [2] "/net/www/docs/homes/stephens/GO2/1409/141008.html"
 [3] "/net/www/docs/homes/stephens/GO2/1409/141009.html"
 [4] "/net/www/docs/homes/stephens/GO2/1409/141010.html"
 [5] "/net/www/docs/homes/stephens/GO2/1409/141011.html"
 [6] "/net/www/docs/homes/stephens/GO2/1409/141012.html"
 [7] "/net/www/docs/homes/stephens/GO2/1409/141013.html"
 [8] "/net/www/docs/homes/stephens/GO2/1409/141014.html"
 [9] "/net/www/docs/homes/stephens/GO2/1409/141015.html"
[10] "/net/www/docs/homes/stephens/GO2/1409/141016.html"
[11] "/net/www/docs/homes/stephens/GO2/1409/141017.html"
[12] "/net/www/docs/homes/stephens/GO2/1409/141018.html"
[13] "/net/www/docs/homes/stephens/GO2/1409/141019.html"
[14] "/net/www/docs/homes/stephens/GO2/1409/141020.html"
[1] "141007" "141020"
 [1] "141007" "141008" "141009" "141010" "141011" "141012" "141013" "141014"
 [9] "141015" "141016" "141017" "141018" "141019" "141020"
[1] "000000" "999999"
[1] "141007_mr_proc.txt, 141007_cal_periods.txt, 141007_cal_param.txt,16jogs"
[1] "141008_mr_proc.txt, 141008_cal_periods.txt, 141008_cal_param.txt,92jogs"
[1] "141009_mr_proc.txt, 141009_cal_periods.txt, 141009_cal_param.txt,382jogs"
[1] "141010_mr_proc.txt, 141010_cal_periods.txt, 141010_cal_param.txt,1429jogs"
[1] "141011_mr_proc.txt, 141011_cal_periods.txt, 141011_cal_param.txt,1426jogs"
[1] "141012_mr_proc.txt, 141012_cal_periods.txt, 141012_cal_param.txt,1420jogs"
[1] "141013_mr_proc.txt, 141013_cal_periods.txt, 141013_cal_param.txt,1426jogs"
[1] "141014_mr_proc.txt, 141014_cal_periods.txt, 141014_cal_param.txt,1418jogs"
[1] "141015_mr_proc.txt, 141015_cal_periods.txt, 141015_cal_param.txt,1369jogs"
[1] "141016_mr_proc.txt, 141016_cal_periods.txt, 141016_cal_param.txt,1435jogs"
[1] "141017_mr_proc.txt, 141017_cal_periods.txt, 141017_cal_param.txt,1416jogs"
[1] "141018_mr_proc.txt, 141018_cal_periods.txt, 141018_cal_param.txt,1423jogs"
[1] "141019_mr_proc.txt, 141019_cal_periods.txt, 141019_cal_param.txt,1181jogs"
[1] "141020_mr_proc.txt, 141020_cal_periods.txt, 141020_cal_param.txt,1171jogs"
[1] "141007" "141020" "d280"   "d293"  
[1] "Calculating derived concentration values"
[1] "2017-04-06 12:15:07 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.836, ave o2scale2 = 0.753"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-06 12:15:19 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-06 12:15:40 MDT"
[1] "2017-04-06 12:15:45 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 376.46 O2 = -483"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.8 O2 = -548.3"
[1] "position 3 cylinder CC339490 description: LS CO2 = 404.04 O2 = -642.5"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.91 O2 = -579.2"
[1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1409 Valve transient for  Line 1 after Line 2 = 1.65 , 1.17 , 0.4 , 0.09 , 0.06 n = 3"
[1] "1409 Valve transient for  Line 1 after Cal = 0.4 , 0.24 , 0.07 , 0.02 , 0 n = 45"
[1] "1409 Valve transient for  Line 2 after Line 1 = 0.34 , 0.28 , 0.15 , 0.05 , 0.03 n = 2"
[1] "1409 Valve transient for  Line 2 after Cal = -1.32 , -0.65 , 0 , -0.06 , -0.08 n = 2"
[1] "1409 Valve transient for  Line 1 after HS = 0.44 , 0.31 , 0.11 , 0.04 , 0.04 n = 13"
[1] "1409 Valve transient for  Line 1 after MS = 0.56 , 0.41 , 0.09 , 0.02 , -0.03 n = 23"
[1] "1409 Valve transient for  Line 1 after LT = -1.82 , -1.3 , -0.44 , -0.03 , 0 n = 9"
[1] "1409 Valve transient for  Line 2 after HS = -1.32 , -0.65 , 0 , -0.06 , -0.08 n = 2"
[1] "1409 Valve transient for  Line 2 after LT = -1.27 , -0.73 , -0.09 , 0.01 , 0.03 n = 1"
[1] "1409 Valve transient for  HS after Line 1 = 1.02 , 0.51 , 0.01 , 0 , 0 n = 24"
[1] "1409 Valve transient for  HS after Line 2 = 0.01 , 0.01 , 0 , 0 , 0 n = 1"
[1] "1409 Valve transient for  HS after LS = 4.39 , 2.21 , 0.02 , 0.01 , 0 n = 22"
[1] "1409 Valve transient for  MS after LS = 1.46 , 0.73 , 0 , 0 , 0 n = 17"
[1] "1409 Valve transient for  MS after LT = 0.86 , 0.43 , 0.01 , 0.01 , 0.01 n = 7"
[1] "1409 Valve transient for  LS after Line 1 = -1.32 , -0.67 , 0 , 0 , 0 n = 21"
[1] "1409 Valve transient for  LS after Line 2 = 0 , 0 , 0 , 0 , 0 n = 2"
[1] "1409 Valve transient for  LS after HS = -4.31 , -2.16 , -0.02 , 0 , 0 n = 30"
[1] "1409 Valve transient for  LT after HS = 0.63 , 0.39 , 0.12 , 0.07 , 0.04 n = 8"
[1] "1409 Valve transient for  LT after LS = 0.8 , 0.49 , 0.13 , 0.07 , 0.04 n = 10"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "325 out of 2020 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "1695 out of 13327 1-min values rejected as stack air"
[1] "1633 out of 12196 Line 1 1-min values rejected as stack air"
[1] "62 out of 1131 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1409loxy.d280"
[1] "LMG1409loxy.d281"
[1] "LMG1409loxy.d282"
[1] "LMG1409loxy.d290"
[1] "LMG1409loxy.d291"
[1] "LMG1409loxy.d292"
[1] "LMG1409loxy.d293"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.3293085
 [2,]  97.5 0.3293085
 [3,] 102.5 0.6586169
 [4,] 107.5 0.9879254
 [5,] 112.5 0.9879254
 [6,] 117.5 1.6465423
 [7,] 122.5 2.1953897
 [8,] 127.5 2.4149286
 [9,] 132.5 0.6586169
[10,] 137.5 0.9879254
[11,] 142.5 0.6586169
[12,] 147.5 0.6586169
[13,] 152.5 0.3293085
[14,] 157.5 0.5488474
[15,] 162.5 0.3293085
[16,] 167.5 0.2195390
[17,] 172.5 0.4390779
[18,] 177.5 0.2195390
[19,] 182.5 0.5488474
[20,] 187.5 0.4390779
[21,] 192.5 0.5488474
[22,] 197.5 0.9879254
[23,] 202.5 1.4270033
[24,] 207.5 1.6465423
[25,] 212.5 2.1953897
[26,] 217.5 1.2074643
[27,] 222.5 1.2074643
[28,] 227.5 0.7683864
[29,] 232.5 0.7683864
[30,] 237.5 1.8660812
[31,] 242.5 1.0976948
[32,] 247.5 0.9879254
[33,] 252.5 0.6586169
[34,] 257.5 0.7683864
[35,] 262.5 1.2074643
[36,] 267.5 0.8781559
[37,] 272.5 0.4390779
[38,] 277.5 0.5488474
[39,] 282.5 0.2195390
[40,] 287.5 0.6586169
[41,] 292.5 0.6586169
[42,] 297.5 0.4390779
[43,] 302.5 0.5488474
[44,] 307.5 0.3293085
[45,] 312.5 1.5367728
[46,] 317.5 0.7683864
[47,] 322.5 0.9879254
[48,] 327.5 1.4270033
[49,] 332.5 2.4149286
[50,] 337.5 1.4270033
[51,] 342.5 0.6586169
[52,] 347.5 0.4390779
[53,] 352.5 0.4390779
[54,] 357.5 0.4390779
[55,] 362.5 0.3293085
[56,] 367.5 0.7683864
[57,] 372.5 0.2195390
[58,] 382.5 0.3293085
[59,] 387.5 0.5488474
[60,] 392.5 0.2195390
[61,] 397.5 0.1097695
[62,] 402.5 0.1097695
[63,] 407.5 0.2195390
[64,] 412.5 0.3293085
[65,] 417.5 0.2195390
[66,] 422.5 0.1097695
[67,] 427.5 0.1097695
[68,] 432.5 0.2195390
[69,] 437.5 0.1097695
[70,] 447.5 0.2195390
       [,1]      [,2]
 [1,]  97.5 0.2195390
 [2,] 102.5 1.9758507
 [3,] 107.5 1.4270033
 [4,] 112.5 1.4270033
 [5,] 117.5 0.7683864
 [6,] 122.5 0.5488474
 [7,] 127.5 0.2195390
 [8,] 182.5 0.1097695
 [9,] 192.5 0.2195390
[10,] 197.5 1.0976948
[11,] 202.5 1.3172338
[12,] 207.5 2.6344676
[13,] 212.5 1.7563117
[14,] 217.5 1.3172338
[15,] 222.5 2.4149286
[16,] 227.5 4.2810099
[17,] 232.5 2.4149286
[18,] 237.5 1.3172338
[19,] 242.5 0.3293085
[20,] 247.5 0.1097695
[21,] 252.5 0.2195390
[22,] 257.5 0.1097695
[23,] 262.5 0.3293085
[24,] 277.5 0.1097695
[25,] 282.5 0.3293085
[26,] 287.5 0.4390779
[27,] 292.5 0.2195390
[28,] 297.5 0.4390779
[29,] 302.5 0.4390779
[30,] 307.5 0.1097695
[31,] 312.5 0.1097695
[32,] 317.5 0.1097695
[33,] 322.5 0.1097695
[34,] 327.5 0.7683864
[35,] 332.5 0.5488474
[36,] 337.5 0.3293085
[37,] 342.5 0.1097695
[38,] 362.5 0.2195390
[39,] 382.5 0.3293085
[40,] 392.5 0.1097695
[41,] 397.5 0.1097695
       [,1]      [,2]
 [1,] 102.5 0.1097695
 [2,] 207.5 0.1097695
 [3,] 212.5 0.1097695
 [4,] 217.5 0.7683864
 [5,] 222.5 3.1833150
 [6,] 227.5 1.0976948
 [7,] 232.5 0.2195390
 [8,] 297.5 0.1097695
 [9,] 307.5 0.2195390
[10,] 312.5 0.1097695
[11,] 317.5 0.3293085
[12,] 322.5 0.1097695
[13,] 327.5 0.5488474
[14,] 332.5 0.5488474
[15,] 337.5 0.6586169
[16,] 342.5 0.2195390
[17,] 347.5 0.4390779
[18,] 352.5 0.9879254
[19,] 357.5 1.5367728
[20,] 362.5 0.8781559
[21,] 367.5 0.1097695
      [,1]      [,2]
[1,] 347.5 0.2195390
[2,] 352.5 2.0856202
[3,] 357.5 0.8781559
[4,] 362.5 0.2195390
[5,] 367.5 0.1097695
[6,] 372.5 0.2195390
[1] "making cruise html"
[1] "2017-04-06 12:16:13 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"