[1] "2017-04-06 12:02:32 MDT"
[1] "1408"   "140926" "d269"  
[1] "reading in high rate data from /scr/raf/stephens/GO2DAT/DIRECT/140926a.hr"
[1] "reading in hr file header"
Read 27 items
[1] "Parsing HR flags"
[1] "Doing high rate calculations (mean, sd, slope, shape)"
[1] "recalculating jog averages"
[1] "recalculating jog sds"
[1] "recalculating jog slopes"
[1] "Parsing MR flags"
[1] "Calculating derived concentration values"
[1] "2017-04-06 12:02:42 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.822, ave o2scale2 = 0.741"
[1] "179 MR delta diff NA values ( most likely because WTDIFF > 200 )"
[1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.822, ave o2scale2 = 0.741"
[1] "179 RC delta diff NA values ( most likely because WTDIFF > 200 )"
[1] "2017-04-06 12:02:44 MDT"
[1] "Plotting 1-second data"
[1] "2017-04-06 12:02:44 MDT"
[1] "reading in high-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-06 12:03:00 MDT"
[1] "reading in medium-rate plot titles"
[1] "Plotting recalculated 1-minute data"
[1] "2017-04-06 12:03:03 MDT"
[1] "reading in recalculated plot titles"
[1] "Removed 179 row(s) with NAs in them ( most likely because WTDIFF > 200 )"
[1] "TEMP: 1053 0 TRUE"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-06 12:03:07 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 376.46 O2 = -483"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.8 O2 = -548.4"
[1] "position 3 cylinder CC339490 description: LS CO2 = 404.03 O2 = -642.4"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.91 O2 = -579.2"
[1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA"
[1] "Nominal linear calibrations:"
[1] "co2scl = 0.478  co2off = 378.26 o2scla = 1  o2offa = 0"
[1] "Finding cal and sample periods"
[1] "Plotting MR jog shapes"
[1] "Median Cal: 9.01 minutes"
[1] "Average Cal: 7.93 minutes"
[1] "Shortest Cal: 1 minutes"
[1] "Longest Cal: 9.01 minutes"
[1] "Removed 3 calibration row(s) with high SD"
[1] "Plotting calibration sds and slopes"
[1] "cbind(calstart,calend)"
     calstart calend
[1,]        1      2
[2,]        3      5
[3,]        6      7
[4,]        8      9
[1] "calperiods$grp"
[1] 2 2 3 3 3 2 2 2 2
[1] "Plotting calibration fits"
[1] "Average calibration parameters:"
[1] "co2l0 = 390.761  co2l1 = 0.476 co2l0 = 0.102"
[1] "co2l0 = -145.07  co2l1 = 0.219"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "193 out of 268 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "75 out of 903 1-min values rejected as stack air"
[1] "75 out of 903 Line 1 1-min values rejected as stack air"
[1] "0 out of 0 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "making html"