[1] "2025-04-29 22:05:02 MDT" [1] "1408" "140921" "d264" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140921a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:05:06 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.805, ave o2scale2 = 0.726" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "156 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.805, ave o2scale2 = 0.726" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "155 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:05:07 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:05:07 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:05:25 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:05:26 MDT" [1] "reading in recalculated plot titles" [1] "Removed 155 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1281 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:05:32 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -477" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.5" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.478 co2off = 377.4 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.87 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 160 169 0.1183966 0.1246562 0.1222216 2 32.82330 136.2264 1.248844 3 2 170 179 0.1253518 0.1316146 0.1291776 2 -25.15449 283.9488 1.248972 4 5 180 189 0.1323102 0.1385694 0.1375261 NA 11.20181 210.1230 1.248878 6 2 454 463 0.3270960 0.3333552 0.3309208 3 -25.36524 286.4120 1.246947 7 4 464 473 0.3340505 0.3403102 0.3378758 3 32.59101 139.1534 1.246782 8 3 474 483 0.3410056 0.3472650 0.3462217 3 12.94704 215.5439 1.246472 13 4 751 759 0.5364551 0.5420196 0.5399331 2 32.41876 140.2518 1.243003 14 2 760 769 0.5427150 0.5489780 0.5465417 2 -25.53831 282.5110 1.242991 16 2 1031 1034 0.7444712 0.7465579 0.7462101 2 -25.71428 278.1469 1.241611 17 4 1035 1044 0.7514259 0.7576855 0.7552515 2 32.20463 139.4703 1.239751 22 4 1228 1236 0.9531644 0.9587282 0.9566418 2 31.87169 145.3319 1.233717 23 2 1237 1243 0.9601192 0.9649915 0.9635991 2 -26.09543 277.8296 1.233628 jfcv2 co2slp o2slp co2sd o2sd 2 1.384204 0.0002963656 0.8504815 0.003688852 5.9965854 3 1.384303 -0.0005754621 1.0383187 0.013248965 5.8850241 4 1.384175 0.0063651870 3.3138415 0.004507806 4.3165605 6 1.381765 -0.0003409491 0.1175881 0.003325268 3.6155033 7 1.381598 0.0054403883 -0.5699519 0.015244856 2.7292596 8 1.381313 -0.0050745985 -0.3604766 0.013032837 2.8172452 13 1.377442 -0.0040428066 1.8688346 0.011010792 4.3086809 14 1.377375 -0.0091310156 -0.3680902 0.023178847 2.7976213 16 1.376060 -0.0116680532 1.0413486 0.008264311 0.7375719 17 1.373976 0.0048936011 -0.1346202 0.013247028 4.7961537 22 1.368227 -0.0033163586 -0.8430601 0.007609701 6.7695506 23 1.368244 -0.0062025616 -6.5795950 0.012468134 14.5319564 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 388.813 co2l1 = 0.476 co2l0 = 0.091" [1] "co2l0 = -145.22 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "157 out of 648 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "491 out of 1098 1-min values rejected as stack air" [1] "428 out of 887 Line 1 1-min values rejected as stack air" [1] "63 out of 211 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"