[1] "2025-04-29 22:03:56 MDT" [1] "1408" "140919" "d262" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140919a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:04:00 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.816, ave o2scale2 = 0.736" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "25 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.816, ave o2scale2 = 0.736" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "25 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:04:00 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:04:00 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:04:19 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:04:20 MDT" [1] "reading in recalculated plot titles" [1] "Removed 25 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1411 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:04:26 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -477" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.5" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.476 co2off = 393.31 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.8 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.05 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 45 51 0.03339083 0.03756421 0.03617332 2 32.80141 134.8269 3 2 52 61 0.03825964 0.04451924 0.04208498 2 -25.18455 284.8266 5 2 342 351 0.23997164 0.24623076 0.24379670 3 -25.02409 272.0212 6 4 352 361 0.24692610 0.25319401 0.25075272 3 32.95118 149.9072 7 5 362 371 0.25388938 0.26014890 0.25910569 NA 11.28487 192.5496 8 3 372 381 0.26084421 0.26710819 0.26606438 3 13.27829 215.1574 10 4 639 648 0.44869682 0.45496065 0.45252472 2 33.04253 140.9933 11 2 649 658 0.45565712 0.46194508 0.45949753 2 -24.95177 282.9953 13 2 925 934 0.65744789 0.66370697 0.66127268 3 -24.87665 276.6291 14 4 935 944 0.66440341 0.67066461 0.66822955 3 33.09578 147.4144 15 3 945 954 0.67136027 0.67761927 0.67657602 3 13.43084 203.8845 17 4 1220 1229 0.86613799 0.87240113 0.86996638 2 33.14617 138.8938 18 2 1230 1239 0.87309673 0.87935932 0.87692517 2 -24.85420 278.4562 19 5 1240 1249 0.88005463 0.88631597 0.88527263 NA 11.48387 194.6685 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.213611 1.344586 0.0020906509 1.13356779 0.0047332352 3.621279 3 1.213862 1.344829 -0.0062200334 0.88195657 0.0165885892 6.084399 5 1.219679 1.351690 -0.0016872507 -0.73189645 0.0065539432 5.033183 6 1.219776 1.351678 0.0040934387 -2.48978112 0.0122432761 8.736006 7 1.219909 1.351889 -0.0062411584 2.33929528 0.0044194174 3.157622 8 1.220325 1.352322 0.0035707337 7.45414797 0.0129165824 11.308115 10 1.224548 1.357697 0.0034729753 -2.98610998 0.0114174053 8.058505 11 1.224661 1.358001 -0.0016951129 -2.00899516 0.0095967669 8.782138 13 1.229976 1.363568 -0.0007036244 0.82300087 0.0043522287 10.760464 14 1.230019 1.363694 0.0049858691 3.17008617 0.0135432508 9.327373 15 1.230235 1.363893 -0.0054291995 -2.63219946 0.0137533656 8.198767 17 1.234157 1.368265 -0.0020246769 1.55807368 0.0056776062 7.164074 18 1.234302 1.368414 0.0002025935 0.07473408 0.0119240733 8.669612 19 1.234472 1.368520 0.0012479720 -13.02022258 0.0008838835 17.597878 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 388.531 co2l1 = 0.476 co2l0 = 0.1" [1] "co2l0 = -146.81 co2l1 = 0.234" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "56 out of 72 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "16 out of 1222 1-min values rejected as stack air" [1] "16 out of 1222 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"