[1] "2025-04-29 22:01:38 MDT" [1] "1408" "140915" "d258" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140915a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:01:42 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.829, ave o2scale2 = 0.746" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "81 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.829, ave o2scale2 = 0.746" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "81 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:01:43 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:01:43 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:02:01 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:02:03 MDT" [1] "reading in recalculated plot titles" [1] "Removed 81 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 176 row(s) with low FLWTA" [1] "TEMP: 1178 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:02:09 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.9" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.5" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.475 co2off = 387.38 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.01 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 83 89 0.06584954 0.07002202 0.06863115 3 -22.52160 285.0678 3 4 90 95 0.07558947 0.07906713 0.07802377 3 35.58947 135.5787 4 3 96 105 0.07976273 0.08602208 0.08497876 3 15.90944 216.6848 6 4 248 257 0.27456227 0.28082144 0.27838722 2 35.56684 133.1246 7 2 258 267 0.28151681 0.28777650 0.28534185 2 -22.52901 280.6744 9 2 510 519 0.48323857 0.48949838 0.48706402 2 -22.57343 282.0745 10 4 520 529 0.49019372 0.49645645 0.49402006 2 35.51772 143.6770 15 4 791 799 0.69260961 0.69817352 0.69608699 2 35.24428 138.4475 16 2 800 809 0.69886889 0.70513177 0.70269754 2 -22.81789 282.1689 18 2 1073 1080 0.90203709 0.90690541 0.90516685 3 -23.33407 280.2914 19 4 1081 1090 0.90760090 0.91386094 0.91142644 3 34.72592 134.2442 20 3 1091 1100 0.91455637 0.92081947 0.91977629 3 15.05368 222.8649 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.209819 1.342716 -0.0078456246 -1.0551183 0.012588639 4.982191 3 1.210390 1.343303 0.0025332762 -7.8159249 0.005793877 14.935277 4 1.210735 1.343632 -0.0078341987 -8.9777511 0.019491041 12.356028 6 1.213181 1.347558 -0.0022828990 -0.8651164 0.008362927 9.457339 7 1.213259 1.347754 0.0080317891 2.6956947 0.030238052 12.806825 9 1.211197 1.346362 -0.0062541288 0.4696734 0.016337315 3.073875 10 1.210912 1.346037 0.0025470209 -0.8571303 0.007941260 5.375853 15 1.203021 1.337905 -0.0177705014 0.7774352 0.042606069 6.722367 16 1.202693 1.337617 0.0068898611 -0.7359163 0.021081944 2.965290 18 1.193826 1.327607 0.0019237507 1.5413138 0.006827840 9.551254 19 1.193507 1.327203 0.0004427545 1.1341472 0.004360787 4.067236 20 1.193248 1.326945 -0.0021934152 2.9370000 0.008903465 3.799481 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 387.453 co2l1 = 0.475 co2l0 = 0.084" [1] "co2l0 = -143.86 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "120 out of 340 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "220 out of 1006 1-min values rejected as stack air" [1] "200 out of 636 Line 1 1-min values rejected as stack air" [1] "20 out of 370 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"