[1] "2025-04-29 22:01:19 MDT" [1] "1408" "140914" "d257" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140914a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 66960 63 [1] 66960 [1] 66960 [1] "testing skipping spike filter" [1] 66960 [1] 66960 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:01:23 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.825, ave o2scale2 = 0.743" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "155 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.825, ave o2scale2 = 0.743" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "154 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:01:23 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:01:23 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:01:31 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:01:32 MDT" [1] "reading in recalculated plot titles" [1] "Removed 154 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 219 row(s) with low FLWTA" [1] "TEMP: 743 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:01:34 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.9" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.5" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.475 co2off = 397 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.01 minutes" [1] "Average Cal: 6.64 minutes" [1] "Shortest Cal: 0 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 4 [3,] 5 6 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 4 2 75 79 0.4491679 0.4519501 0.4512546 1 -23.78269 270.5136 1.219067 6 2 308 316 0.6494930 0.6550567 0.6529702 3 -23.19241 278.4072 1.212134 7 4 317 326 0.6557523 0.6620116 0.6595772 3 34.86579 128.4178 1.211950 8 3 327 335 0.6627072 0.6682743 0.6675789 3 15.27844 223.8515 1.212162 11 4 574 580 0.8571757 0.8613487 0.8599574 2 35.22187 134.5398 1.203443 12 2 581 586 0.8641308 0.8703903 0.8686514 2 -22.86427 274.3129 1.203295 13 5 587 596 0.8710856 0.8773453 0.8763022 NA 13.52278 195.7288 1.203200 jfcv2 co2slp o2slp co2sd o2sd 4 1.352252 0.0279264804 2.146932 0.028246474 4.095873 6 1.344902 0.0007043853 3.022086 0.006896732 8.771672 7 1.344694 0.0164957953 2.771926 0.048192843 8.468859 8 1.344881 0.0009592877 4.046227 0.006679415 4.163210 11 1.335194 -0.0010607427 5.436222 0.002004390 9.385805 12 1.334985 -0.0006766728 1.684740 0.003236500 12.769767 13 1.334902 0.0059288538 5.056662 0.004198447 6.719805 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 387.702 co2l1 = 0.476 co2l0 = 0.058" [1] "co2l0 = -141.31 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "15 out of 140 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "125 out of 645 1-min values rejected as stack air" [1] "112 out of 230 Line 1 1-min values rejected as stack air" [1] "13 out of 415 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"