[1] "2017-04-06 12:03:15 MDT"
[1] "1408"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1408/140914.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1408/140915.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1408/140916.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1408/140917.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1408/140918.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1408/140919.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1408/140920.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1408/140921.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1408/140922.html"  
[10] "/net/www/docs/homes/stephens/GO2/1408/140923.html"  
[11] "/net/www/docs/homes/stephens/GO2/1408/140924.html"  
[12] "/net/www/docs/homes/stephens/GO2/1408/140925.html"  
[13] "/net/www/docs/homes/stephens/GO2/1408/140926.html"  
[14] "/net/www/docs/homes/stephens/GO2/1408/lmg_1408.html"
 [1] "/net/www/docs/homes/stephens/GO2/1408/140914.html"
 [2] "/net/www/docs/homes/stephens/GO2/1408/140915.html"
 [3] "/net/www/docs/homes/stephens/GO2/1408/140916.html"
 [4] "/net/www/docs/homes/stephens/GO2/1408/140917.html"
 [5] "/net/www/docs/homes/stephens/GO2/1408/140918.html"
 [6] "/net/www/docs/homes/stephens/GO2/1408/140919.html"
 [7] "/net/www/docs/homes/stephens/GO2/1408/140920.html"
 [8] "/net/www/docs/homes/stephens/GO2/1408/140921.html"
 [9] "/net/www/docs/homes/stephens/GO2/1408/140922.html"
[10] "/net/www/docs/homes/stephens/GO2/1408/140923.html"
[11] "/net/www/docs/homes/stephens/GO2/1408/140924.html"
[12] "/net/www/docs/homes/stephens/GO2/1408/140925.html"
[13] "/net/www/docs/homes/stephens/GO2/1408/140926.html"
[1] "140914" "140926"
 [1] "140914" "140915" "140916" "140917" "140918" "140919" "140920" "140921"
 [9] "140922" "140923" "140924" "140925" "140926"
[1] "000000" "999999"
[1] "140914_mr_proc.txt, 140914_cal_periods.txt, 140914_cal_param.txt,743jogs"
[1] "140915_mr_proc.txt, 140915_cal_periods.txt, 140915_cal_param.txt,1178jogs"
[1] "140916_mr_proc.txt, 140916_cal_periods.txt, 140916_cal_param.txt,940jogs"
[1] "140917_mr_proc.txt, 140917_cal_periods.txt, 140917_cal_param.txt,1300jogs"
[1] "140918_mr_proc.txt, 140918_cal_periods.txt, 140918_cal_param.txt,1388jogs"
[1] "140919_mr_proc.txt, 140919_cal_periods.txt, 140919_cal_param.txt,1411jogs"
[1] "140920_mr_proc.txt, 140920_cal_periods.txt, 140920_cal_param.txt,1363jogs"
[1] "140921_mr_proc.txt, 140921_cal_periods.txt, 140921_cal_param.txt,1281jogs"
[1] "140922_mr_proc.txt, 140922_cal_periods.txt, 140922_cal_param.txt,1098jogs"
[1] "140923_mr_proc.txt, 140923_cal_periods.txt, 140923_cal_param.txt,1351jogs"
[1] "140924_mr_proc.txt, 140924_cal_periods.txt, 140924_cal_param.txt,1388jogs"
[1] "140925_mr_proc.txt, 140925_cal_periods.txt, 140925_cal_param.txt,1350jogs"
[1] "140926_mr_proc.txt, 140926_cal_periods.txt, 140926_cal_param.txt,1053jogs"
[1] "140914" "140926" "d257"   "d269"  
[1] "Calculating derived concentration values"
[1] "2017-04-06 12:03:35 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.824, ave o2scale2 = 0.742"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-06 12:03:48 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-06 12:04:10 MDT"
[1] "2017-04-06 12:04:15 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 376.45 O2 = -482.9"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.8 O2 = -548.4"
[1] "position 3 cylinder CC339490 description: LS CO2 = 404.03 O2 = -642.3"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.91 O2 = -579.2"
[1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1408 Valve transient for  Line 1 after Line 2 = 0.91 , 1.18 , 0.53 , 0.15 , 0.12 n = 3"
[1] "1408 Valve transient for  Line 1 after Cal = -0.05 , -0.01 , 0.02 , 0.06 , 0.06 n = 43"
[1] "1408 Valve transient for  Line 2 after Line 1 = 1.35 , 0.81 , 0.14 , 0.03 , 0.01 n = 3"
[1] "1408 Valve transient for  Line 2 after Cal = 0.06 , 0.14 , 0.11 , 0.09 , 0.07 n = 5"
[1] "1408 Valve transient for  Line 1 after HS = -0.11 , -0.05 , 0.02 , -0.01 , -0.02 n = 15"
[1] "1408 Valve transient for  Line 1 after MS = 0.02 , 0.03 , 0.1 , 0.06 , 0.06 n = 21"
[1] "1408 Valve transient for  Line 1 after LT = -2.07 , -1.48 , -0.4 , 0.09 , 0.14 n = 7"
[1] "1408 Valve transient for  Line 2 after HS = 0.11 , 0.15 , 0.26 , 0.28 , 0.16 n = 2"
[1] "1408 Valve transient for  Line 2 after MS = -0.05 , -0.03 , 0 , -0.01 , -0.04 n = 3"
[1] "1408 Valve transient for  Line 2 after LT = -2.39 , -1.89 , -0.8 , -0.1 , 0.02 n = 1"
[1] "1408 Valve transient for  HS after Line 1 = 1.08 , 0.55 , 0.01 , 0 , 0 n = 15"
[1] "1408 Valve transient for  HS after Line 2 = -0.01 , 0 , 0 , 0.01 , 0 n = 2"
[1] "1408 Valve transient for  HS after LS = 4.41 , 2.22 , 0.02 , 0 , 0 n = 22"
[1] "1408 Valve transient for  MS after LS = 1.48 , 0.75 , 0.01 , 0.01 , 0.01 n = 10"
[1] "1408 Valve transient for  MS after LT = 0.84 , 0.43 , 0 , 0 , 0 n = 7"
[1] "1408 Valve transient for  LS after Line 1 = -1.23 , -0.62 , 0 , 0 , 0 n = 16"
[1] "1408 Valve transient for  LS after Line 2 = 0 , 0 , 0.01 , 0.01 , 0 n = 4"
[1] "1408 Valve transient for  LS after HS = -4.36 , -2.19 , -0.01 , -0.01 , 0 n = 19"
[1] "1408 Valve transient for  LT after HS = 0 , 0.04 , 0.06 , 0.02 , 0.01 n = 9"
[1] "1408 Valve transient for  LT after LS = 0.19 , 0.14 , 0.06 , 0.04 , 0.03 n = 5"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "613 out of 5226 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "4613 out of 13711 1-min values rejected as stack air"
[1] "4335 out of 11443 Line 1 1-min values rejected as stack air"
[1] "278 out of 2268 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1408loxy.d257"
[1] "LMG1408loxy.d258"
[1] "LMG1408loxy.d259"
[1] "LMG1408loxy.d260"
[1] "LMG1408loxy.d266"
[1] "LMG1408loxy.d267"
[1] "LMG1408loxy.d268"
[1] "LMG1408loxy.d269"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.3460208
 [2,]  97.5 0.6920415
 [3,] 102.5 0.3460208
 [4,] 107.5 0.6920415
 [5,] 112.5 0.8650519
 [6,] 117.5 0.3460208
 [7,] 122.5 0.8650519
 [8,] 127.5 0.6920415
 [9,] 132.5 0.8650519
[10,] 137.5 0.1730104
[11,] 142.5 0.5190311
[12,] 147.5 0.3460208
[13,] 152.5 0.1730104
[14,] 162.5 0.1730104
[15,] 167.5 0.3460208
[16,] 172.5 0.8650519
[17,] 177.5 1.0380623
[18,] 182.5 0.8650519
[19,] 187.5 0.6920415
[20,] 192.5 1.0380623
[21,] 197.5 2.2491349
[22,] 202.5 1.7301038
[23,] 207.5 2.2491349
[24,] 212.5 1.2110727
[25,] 217.5 0.6920415
[26,] 222.5 2.5951557
[27,] 227.5 1.2110727
[28,] 232.5 1.0380623
[29,] 237.5 1.2110727
[30,] 242.5 0.8650519
[31,] 247.5 0.8650519
[32,] 252.5 1.3840830
[33,] 257.5 1.2110727
[34,] 262.5 2.2491349
[35,] 267.5 1.2110727
[36,] 272.5 0.6920415
[37,] 277.5 0.3460208
[38,] 282.5 0.6920415
[39,] 287.5 1.0380623
[40,] 292.5 1.0380623
[41,] 297.5 1.2110727
[42,] 302.5 0.6920415
[43,] 307.5 0.6920415
[44,] 312.5 0.5190311
[45,] 317.5 1.2110727
[46,] 322.5 1.5570934
[47,] 327.5 1.3840830
[48,] 332.5 1.7301038
[49,] 337.5 1.0380623
[50,] 342.5 1.3840830
[51,] 347.5 0.6920415
[52,] 352.5 1.2110727
[53,] 357.5 1.0380623
[54,] 362.5 0.6920415
[55,] 367.5 0.5190311
[56,] 372.5 0.6920415
[57,] 377.5 1.0380623
[58,] 382.5 0.3460208
[59,] 387.5 0.3460208
[60,] 392.5 0.5190311
[61,] 397.5 0.8650519
[62,] 402.5 0.6920415
[63,] 407.5 0.6920415
[64,] 412.5 0.3460208
[65,] 417.5 0.1730104
[66,] 422.5 0.8650519
[67,] 427.5 0.5190311
[68,] 432.5 0.5190311
[69,] 437.5 0.6920415
[70,] 442.5 0.6920415
[71,] 447.5 1.2110727
       [,1]      [,2]
 [1,]  92.5 0.6920415
 [2,] 102.5 0.3460208
 [3,] 107.5 0.5190311
 [4,] 112.5 0.1730104
 [5,] 117.5 0.3460208
 [6,] 122.5 0.1730104
 [7,] 127.5 0.6920415
 [8,] 132.5 0.1730104
 [9,] 137.5 0.5190311
[10,] 142.5 0.1730104
[11,] 192.5 0.1730104
[12,] 197.5 0.8650519
[13,] 202.5 3.1141869
[14,] 207.5 1.7301038
[15,] 217.5 0.6920415
[16,] 222.5 0.5190311
[17,] 227.5 0.6920415
[18,] 232.5 0.3460208
[19,] 237.5 0.1730104
[20,] 277.5 0.1730104
[21,] 292.5 0.3460208
[22,] 327.5 0.6920415
[23,] 332.5 0.1730104
[24,] 337.5 0.1730104
[25,] 342.5 0.6920415
[26,] 352.5 0.5190311
[27,] 357.5 1.0380623
[28,] 362.5 0.6920415
[29,] 367.5 0.6920415
[30,] 382.5 0.1730104
[31,] 387.5 0.3460208
[32,] 392.5 0.3460208
[33,] 407.5 0.1730104
[34,] 417.5 0.1730104
[35,] 432.5 0.1730104
[36,] 437.5 0.1730104
[37,] 442.5 0.1730104
[38,] 447.5 0.1730104
       [,1]      [,2]
 [1,]  92.5 0.3460208
 [2,]  97.5 0.1730104
 [3,] 107.5 0.1730104
 [4,] 117.5 0.1730104
 [5,] 122.5 0.1730104
 [6,] 327.5 0.6920415
 [7,] 332.5 0.3460208
 [8,] 337.5 0.3460208
 [9,] 342.5 0.3460208
[10,] 347.5 0.1730104
[11,] 352.5 0.1730104
[12,] 372.5 0.1730104
[13,] 427.5 0.1730104
[14,] 432.5 0.3460208
[15,] 437.5 0.3460208
[16,] 447.5 0.1730104
       [,1]      [,2]
 [1,]  92.5 1.5570934
 [2,]  97.5 0.1730104
 [3,] 347.5 0.1730104
 [4,] 352.5 0.1730104
 [5,] 387.5 0.3460208
 [6,] 392.5 3.4602076
 [7,] 397.5 2.0761246
 [8,] 402.5 0.1730104
 [9,] 407.5 0.3460208
[10,] 422.5 0.1730104
[11,] 427.5 0.5190311
[12,] 432.5 0.5190311
[13,] 437.5 0.6920415
[14,] 442.5 1.3840830
[15,] 447.5 1.2110727
[1] "making cruise html"
[1] "2017-04-06 12:04:41 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"