[1] "2025-04-29 21:54:01 MDT" [1] "1406" "140821" "d233" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140821a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:54:05 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.804, ave o2scale2 = 0.724" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.804, ave o2scale2 = 0.724" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "2025-04-29 21:54:05 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:54:05 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:54:24 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:54:26 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1436 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:54:29 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.8" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.6" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.473 co2off = 385.81 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 139 148 0.09699314 0.1032530 0.1008187 3 -19.50793 276.9652 3 4 149 158 0.10394806 0.1102112 0.1077768 3 38.96128 130.3553 4 3 159 168 0.11090654 0.1171661 0.1161230 3 19.13150 208.0914 6 4 439 448 0.30571994 0.3119827 0.3095478 2 38.99343 133.2237 7 2 449 458 0.31267827 0.3189376 0.3165034 2 -19.45319 278.1230 9 2 739 748 0.51442005 0.5206794 0.5182453 3 -19.45716 278.5272 10 4 749 758 0.52137500 0.5276377 0.5252030 3 38.98351 131.0049 11 5 759 768 0.52833333 0.5345961 0.5335527 NA 17.16344 202.5986 12 3 769 778 0.53529167 0.5415508 0.5405075 3 19.16705 217.2035 14 4 1039 1048 0.72312049 0.7293843 0.7269491 2 39.02976 132.8133 15 2 1049 1058 0.73007986 0.7363398 0.7339055 2 -19.38508 279.3146 17 2 1339 1348 0.93179196 0.9380552 0.9356205 3 -19.33843 281.8050 18 4 1349 1358 0.93875093 0.9450104 0.9425760 3 39.09657 135.7134 19 3 1359 1368 0.94570602 0.9519653 0.9509219 3 19.26718 217.7120 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.242784 1.380398 -0.0015519126 1.1974600 0.004158742 7.518091 3 1.242859 1.380487 0.0035313564 -0.8029043 0.010214005 10.206309 4 1.242921 1.380554 -0.0039997696 -8.3888327 0.010190704 11.909013 6 1.243301 1.380974 -0.0029182217 -1.3269244 0.007244105 5.590986 7 1.243267 1.380887 -0.0075245451 2.1479960 0.021530268 7.580541 9 1.244354 1.381451 -0.0005367034 -0.4032545 0.005628174 4.729069 10 1.244452 1.381591 0.0055429443 -0.2768695 0.015917527 8.026994 11 1.244553 1.381820 -0.0290777487 -1.4055044 0.020594485 2.160955 12 1.245078 1.382324 0.0008744234 9.6912665 0.005439546 13.972120 14 1.245652 1.383411 -0.0019208793 0.1927576 0.013052497 8.717811 15 1.245628 1.383422 -0.0098386649 1.1174748 0.025636904 3.544683 17 1.246973 1.385033 -0.0018273836 2.6218849 0.007515938 8.380195 18 1.246925 1.385046 0.0022752430 1.3239922 0.009460647 4.743285 19 1.247013 1.385161 -0.0049476089 8.3748985 0.012429418 11.047677 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 385.822 co2l1 = 0.473 co2l0 = 0.087" [1] "co2l0 = -142.59 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "376 out of 659 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "283 out of 1254 1-min values rejected as stack air" [1] "283 out of 1254 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"