[1] "2025-04-29 21:51:20 MDT" [1] "1406" "140816" "d228" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140816a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:51:24 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.84, ave o2scale2 = 0.757" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.84, ave o2scale2 = 0.757" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "2025-04-29 21:51:24 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:51:24 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:51:44 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:51:46 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1436 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:51:49 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.8" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.6" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.473 co2off = 386.36 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 194 203 0.1351598 0.1414225 0.1389887 3 -20.34092 280.7870 1.192854 3 4 204 213 0.1421181 0.1483775 0.1459436 3 38.04649 133.2368 1.192758 4 3 214 223 0.1490729 0.1553359 0.1542929 3 18.23702 216.4774 1.193260 6 4 494 503 0.3438417 0.3501008 0.3476668 2 38.06247 138.5208 1.190374 7 2 504 513 0.3507964 0.3570556 0.3546216 2 -20.37238 280.0420 1.190379 8 5 514 523 0.3577512 0.3640104 0.3629673 NA 15.76891 201.0458 1.190120 10 2 794 803 0.5525320 0.5587942 0.5563602 3 -20.39742 281.6062 1.188980 11 4 804 813 0.5594897 0.5657500 0.5633155 3 38.01065 137.9058 1.188516 12 3 814 823 0.5664453 0.5727048 0.5716615 3 18.17915 214.0566 1.188399 14 4 1094 1103 0.7612141 0.7674769 0.7650408 2 38.02388 140.6317 1.190562 15 2 1104 1113 0.7681725 0.7744317 0.7719975 2 -20.40476 282.0879 1.190744 17 2 1394 1403 0.9699144 0.9761773 0.9737408 3 -20.37768 282.7163 1.192940 18 4 1404 1413 0.9768728 0.9831328 0.9806982 3 38.05741 137.1720 1.192769 19 5 1414 1423 0.9838281 0.9900873 0.9890442 NA 15.84450 195.5561 1.192785 20 3 1424 1433 0.9907829 0.9970427 0.9959994 3 18.26599 218.4000 1.192935 jfcv2 co2slp o2slp co2sd o2sd 2 1.322754 -0.0042066562 -0.55936609 0.010644559 2.386449 3 1.322642 0.0028314304 0.32208488 0.010330230 3.044698 4 1.323204 0.0010085822 -1.14453848 0.010016769 1.564598 6 1.320006 0.0003477032 -0.21691050 0.003213740 2.582450 7 1.320008 -0.0074935235 -0.09513678 0.023076794 2.604735 8 1.319702 -0.0107958564 3.97933571 0.007645592 5.249325 10 1.318465 -0.0017341107 0.98997738 0.006857343 2.650612 11 1.317957 0.0022827617 -0.41804026 0.015225278 4.734699 12 1.317830 -0.0038295543 -2.54022960 0.011464178 3.809318 14 1.320218 0.0029370195 -0.72014646 0.008773975 3.098055 15 1.320439 -0.0013038611 0.24551452 0.009920748 2.694670 17 1.322893 0.0007505221 0.63772464 0.008160256 1.684262 18 1.322703 0.0018609763 1.41133014 0.013652288 4.304817 19 1.322729 -0.0064918851 1.05578672 0.004596194 1.574487 20 1.322886 0.0003143634 0.77256382 0.007456603 1.413796 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 386.274 co2l1 = 0.473 co2l0 = 0.09" [1] "co2l0 = -144.13 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "137 out of 720 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "583 out of 1236 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "583 out of 1236 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"