[1] "2025-04-29 21:50:44 MDT" [1] "1406" "140815" "d227" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140815a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85980 63 [1] 85980 [1] 85980 [1] "testing skipping spike filter" [1] 85980 [1] 85980 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:50:48 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.838, ave o2scale2 = 0.756" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "1 MR delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.838, ave o2scale2 = 0.756" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "3 RC delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "2025-04-29 21:50:49 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:50:49 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:51:09 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:51:10 MDT" [1] "reading in recalculated plot titles" [1] "Removed 3 row(s) with NAs in them ( most likely because WTDIFF > 1000 )" [1] "TEMP: 1429 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:51:15 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.8" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.6" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.473 co2off = 386.15 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.73 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 130 139 0.09205671 0.09831944 0.09588555 2 38.27209 139.1668 3 2 140 149 0.09901505 0.10527543 0.10284059 2 -20.16236 277.7823 4 5 150 159 0.10597086 0.11223383 0.11118863 NA 16.03263 197.6098 6 2 430 439 0.30075677 0.30701612 0.30458167 3 -20.28912 283.7051 7 4 440 449 0.30771163 0.31397034 0.31153636 3 38.11012 137.8856 8 3 450 459 0.31466571 0.32092830 0.31988521 3 18.29069 214.9499 10 4 729 738 0.50949864 0.51575816 0.51332393 2 38.05048 136.2700 11 2 739 748 0.51645362 0.52271267 0.52027845 2 -20.34527 278.0394 13 2 1024 1032 0.71765272 0.72322002 0.72113108 3 -20.30737 280.0603 14 4 1033 1041 0.72391551 0.72947937 0.72739275 3 38.07464 134.0069 16 3 1051 1059 0.73643411 0.74199769 0.74130212 3 18.26163 215.2231 18 4 1324 1333 0.92642477 0.93268770 0.93025139 2 38.11670 133.8040 19 2 1334 1343 0.93338316 0.93964268 0.93720838 2 -20.30736 282.9018 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.201759 1.332526 0.0009808164 -0.271459631 0.004633559 5.435281 3 1.201447 1.332182 -0.0035127442 0.765177800 0.013800829 3.198675 4 1.201137 1.331834 -0.0082359303 -1.277112828 0.005833631 2.167966 6 1.190729 1.320387 -0.0011997698 -0.005996806 0.004284841 2.522098 7 1.190683 1.320342 0.0019293346 0.004283796 0.009387042 2.955411 8 1.190416 1.320054 0.0014263354 2.292846934 0.007924518 3.915874 10 1.188250 1.317620 0.0002681637 -0.760595875 0.002677606 2.834817 11 1.188559 1.317959 -0.0008052706 1.412954983 0.006372877 3.905866 13 1.191367 1.321032 -0.0051524285 1.190353446 0.011426737 4.044613 14 1.191029 1.320730 0.0005234444 0.918920378 0.011150644 2.109918 16 1.190398 1.320101 -0.0021109927 2.912324854 0.005922506 2.936952 18 1.193434 1.323389 0.0034056292 0.390803892 0.009509772 1.658498 19 1.193778 1.323787 -0.0053695715 0.136976623 0.017004948 1.386759 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 386.224 co2l1 = 0.473 co2l0 = 0.093" [1] "co2l0 = -143.76 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "145 out of 345 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "200 out of 1241 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "200 out of 1241 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"