[1] "2025-04-29 21:50:11 MDT" [1] "1406" "140814" "d226" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140814a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:50:15 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.822, ave o2scale2 = 0.742" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.822, ave o2scale2 = 0.742" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "2025-04-29 21:50:15 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:50:15 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:50:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:50:36 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1436 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:50:40 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.8" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.6" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.473 co2off = 385.98 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 69 78 0.04847457 0.05473383 0.05229983 3 -19.78818 283.2291 3 4 79 88 0.05542940 0.06168860 0.05925431 3 38.61547 135.8000 4 3 89 98 0.06238406 0.06864355 0.06760014 3 18.80970 213.3133 6 4 369 378 0.25715278 0.26341594 0.26097968 2 38.63431 139.7663 7 2 379 388 0.26411134 0.27037948 0.26793915 2 -19.75885 281.5112 9 2 669 678 0.46587622 0.47213602 0.46970195 3 -19.77874 284.7061 10 4 679 688 0.47283131 0.47909074 0.47665670 3 38.60380 137.5810 11 5 689 698 0.47978608 0.48604569 0.48500261 NA 16.47031 197.6983 12 3 699 708 0.48674094 0.49300006 0.49195689 3 18.79232 212.6651 14 4 969 978 0.67457159 0.68083093 0.67839655 2 38.58657 137.7809 15 2 979 988 0.68152627 0.68778588 0.68535140 2 -19.84124 281.1382 17 2 1269 1278 0.88323918 0.88950174 0.88706768 3 -19.99108 281.7581 18 4 1279 1288 0.89019708 0.89645692 0.89402257 3 38.42684 136.1911 19 3 1289 1298 0.89715217 0.90341551 0.90237221 3 18.61164 214.3895 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.217577 1.350037 0.0002370451 -0.08864345 0.003236482 4.051211 3 1.217624 1.350084 0.0024631395 0.13252409 0.014933558 1.769647 4 1.217777 1.350254 0.0041904779 -1.16913492 0.010836743 2.170203 6 1.218924 1.351509 0.0030677970 -0.85214762 0.007875142 2.590193 7 1.219114 1.351712 -0.0037386932 0.28817843 0.013553010 1.327415 9 1.218839 1.351417 -0.0026753886 -0.72347238 0.008068031 2.382698 10 1.218632 1.351180 -0.0015525970 0.25683133 0.010055413 1.634448 11 1.219451 1.352076 0.0018725033 1.60776868 0.001325825 2.402764 12 1.218750 1.351316 0.0041328837 -4.84558245 0.016284457 6.754418 14 1.216545 1.348844 -0.0001004263 0.64242509 0.011248682 3.340203 15 1.216412 1.348698 -0.0058331909 0.57622988 0.015633442 1.894024 17 1.210277 1.341967 -0.0004531030 0.73082469 0.003949705 3.335519 18 1.209846 1.341485 0.0053560571 0.34310609 0.017602823 1.196795 19 1.209568 1.341177 -0.0008124519 0.94892498 0.004427460 1.518748 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 386.018 co2l1 = 0.473 co2l0 = 0.088" [1] "co2l0 = -143.76 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "149 out of 880 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "731 out of 1254 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "731 out of 1254 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"