[1] "2025-04-29 21:47:56 MDT" [1] "1406" "140810" "d222" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140810a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:48:00 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.845, ave o2scale2 = 0.762" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.845, ave o2scale2 = 0.762" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "2025-04-29 21:48:01 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:48:01 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:48:20 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:48:21 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1436 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:48:25 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.8" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.6" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.473 co2off = 386.4 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 119 128 0.08340408 0.08966429 0.08722993 2 37.61281 135.9436 3 2 129 138 0.09035966 0.09662269 0.09418847 2 -20.82539 282.6853 4 5 139 148 0.09731823 0.10357778 0.10253474 NA 15.25075 197.0226 6 2 419 428 0.29208999 0.29835281 0.29591753 3 -20.66416 278.2865 7 4 429 438 0.29904789 0.30530787 0.30287317 3 37.75851 135.2636 8 3 439 448 0.30600333 0.31226606 0.31122099 3 17.94444 217.7541 10 4 719 728 0.50077720 0.50704051 0.50460271 2 37.73227 135.3422 11 2 729 738 0.50773611 0.51399494 0.51156083 2 -20.66864 277.5159 13 2 1019 1028 0.70946183 0.71572156 0.71328698 3 -20.57357 280.7320 14 4 1029 1038 0.71641698 0.72267645 0.72024230 3 37.85113 137.7263 15 5 1039 1048 0.72337187 0.72963533 0.72859200 NA 15.60947 201.4827 16 3 1049 1058 0.73033070 0.73659028 0.73554696 3 18.07287 215.2649 18 4 1319 1328 0.91815744 0.92441667 0.92198245 2 37.90655 137.4335 19 2 1329 1338 0.92511230 0.93137153 0.92893753 2 -20.48338 278.8613 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.176276 1.304983 -0.0040234987 -0.335026605 0.012111093 3.7255611 3 1.176510 1.305240 -0.0051798640 0.612287179 0.016471118 2.8150988 4 1.176651 1.305375 -0.0077393584 2.408210206 0.005480078 3.6024733 6 1.182059 1.311240 -0.0007252589 0.002164074 0.006177346 2.4575438 7 1.182158 1.311356 0.0064440736 -0.286942067 0.018291978 1.2804197 8 1.182342 1.311557 -0.0034754147 1.466746134 0.009311152 1.9462380 10 1.184646 1.313988 0.0021349411 0.270656881 0.007346703 2.9815674 11 1.184723 1.314090 -0.0061054435 2.368172373 0.017446722 6.8493611 13 1.186551 1.316192 -0.0016230193 -1.039091365 0.005719976 3.4110597 14 1.186596 1.316236 0.0052947566 0.408565218 0.013887359 1.9491711 15 1.186883 1.316574 -0.0071764363 0.020471078 0.005082330 0.6534708 16 1.187065 1.316763 -0.0030807363 -2.662780743 0.009448665 3.4942424 18 1.189791 1.319741 -0.0002697494 0.568617028 0.012858538 2.1641098 19 1.189859 1.319838 -0.0056833762 0.083280371 0.016825670 2.7942316 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 386.391 co2l1 = 0.473 co2l0 = 0.084" [1] "co2l0 = -144.03 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "148 out of 620 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "472 out of 1244 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "472 out of 1244 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"