[1] "2025-04-29 21:45:44 MDT" [1] "1406" "140806" "d218" Read 2 records [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140806a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:45:48 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.823, ave o2scale2 = 0.74" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.823, ave o2scale2 = 0.74" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "2025-04-29 21:45:48 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:45:48 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:46:07 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:46:09 MDT" [1] "reading in recalculated plot titles" [1] "Removed 849 manually filtered row(s) from a screenline1 period" [1] "TEMP: 586 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:46:12 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.6" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.474 co2off = 386.16 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 29.76 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 299.51 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 168 177 0.1179448 0.1242040 0.1217700 3 -20.12043 281.0714 1.213981 3 4 178 187 0.1248994 0.1311587 0.1287246 3 38.26066 135.1093 1.213832 4 3 188 197 0.1318542 0.1381134 0.1370702 3 18.44823 214.0703 1.213824 6 4 407 416 0.3266366 0.3329009 0.3304636 2 38.33327 134.7074 1.213838 7 2 417 426 0.3336004 0.3398592 0.3374252 2 -20.06991 279.6176 1.213923 8 5 427 436 0.3405564 0.3468202 0.3457771 NA 16.13887 197.5404 1.213769 10 2 497 506 0.5353446 0.5416035 0.5391695 3 -20.09104 280.2504 1.214621 11 4 507 516 0.5422989 0.5485583 0.5461243 3 38.31472 134.7319 1.214462 12 3 517 526 0.5492536 0.5555128 0.5544696 3 18.50927 215.9870 1.214419 13 4 527 536 0.7440463 0.7503102 0.7478741 1 38.31455 133.7092 1.214963 15 4 557 566 0.9596931 0.9659525 0.9635182 2 38.28586 136.1791 1.215316 16 5 567 576 0.9666481 0.9729075 0.9718640 NA 16.02859 199.3680 1.215572 17 3 577 586 0.9736028 0.9798623 0.9788191 2 18.49552 215.4079 1.215403 jfcv2 co2slp o2slp co2sd o2sd 2 1.351404 -6.922003e-03 -1.2434125 0.017240921 3.993817 3 1.351249 -6.112845e-04 1.6122026 0.009452356 4.573363 4 1.351238 -7.310708e-04 -1.0155789 0.004868786 2.801911 6 1.351353 3.572182e-03 -0.2122464 0.009220933 1.895279 7 1.351462 -6.160700e-03 0.1514264 0.016262255 2.326004 8 1.351314 -5.492905e-03 1.2031229 0.003889087 3.186506 10 1.352312 -2.183501e-03 0.3661313 0.010462941 1.946461 11 1.352142 1.086264e-03 0.4803510 0.011576464 2.664858 12 1.352086 -4.007826e-03 -0.8467063 0.012989597 2.150008 13 1.352665 -6.390235e-05 1.6031397 0.002232259 4.960348 15 1.353111 4.289167e-03 0.5108231 0.012383824 1.851137 16 1.353368 -6.426521e-03 -0.1906518 0.004552000 2.436205 17 1.353146 -2.761004e-03 4.2020065 0.007716427 5.596759 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 386.201 co2l1 = 0.471 co2l0 = 0.089" [1] "co2l0 = -143.28 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "6 out of 35 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "29 out of 404 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "29 out of 404 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"