[1] "2025-04-29 21:44:31 MDT" [1] "1406" "140802" "d214" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140802a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84256 63 [1] 84256 [1] 84256 [1] "testing skipping spike filter" [1] 84256 [1] 84256 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:44:35 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.829, ave o2scale2 = 0.747" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "2 MR delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.829, ave o2scale2 = 0.747" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "2 RC delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "2025-04-29 21:44:35 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:44:35 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:44:55 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:44:56 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 1000 )" [1] "TEMP: 1400 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:44:59 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.6" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.474 co2off = 381.19 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.25 minutes" [1] "Shortest Cal: 2.01 minutes" [1] "Longest Cal: 9.06 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 6 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 209 217 0.1460081 0.1522801 0.1496918 2 -20.07590 275.3647 1.207339 4 3 228 237 0.1599516 0.1662187 0.1651746 2 18.52635 218.7025 1.206657 6 4 508 517 0.3549403 0.3612346 0.3587814 2 38.29576 136.7387 1.206210 7 2 518 527 0.3619353 0.3682036 0.3657689 2 -20.10823 280.5612 1.206307 8 5 528 537 0.3688992 0.3751617 0.3741185 NA 16.07600 197.4481 1.206233 10 2 807 816 0.5637364 0.5699965 0.5675623 3 -20.10854 278.8218 1.206260 11 4 817 826 0.5706921 0.5769514 0.5745169 3 38.28644 135.1859 1.206278 12 3 827 836 0.5776470 0.5839062 0.5828628 3 18.46896 212.1635 1.206208 14 4 1104 1113 0.7727589 0.7790221 0.7765853 2 38.33466 133.5114 1.208266 15 2 1114 1123 0.7797176 0.7859780 0.7835430 2 -20.08287 279.8392 1.208398 17 2 1374 1381 0.9799800 0.9848519 0.9831111 2 -20.09354 276.0586 1.210242 18 4 1382 1389 0.9855475 0.9904599 0.9886857 2 38.30327 133.3622 1.210230 jfcv2 co2slp o2slp co2sd o2sd 2 1.339148 -2.841747e-04 -5.0939449 0.0093049731 14.435016 4 1.337921 -1.242983e-03 3.2816208 0.0051893755 4.818442 6 1.337407 -3.434265e-05 0.1649578 0.0030573823 1.650318 7 1.337511 -3.339882e-03 -0.2642473 0.0102601621 1.337543 8 1.337441 -4.994173e-04 1.2589160 0.0003535534 1.634311 10 1.337487 -8.093589e-04 -0.3814019 0.0063555320 2.480864 11 1.337518 2.639901e-03 -1.4126705 0.0121190155 4.302654 12 1.337435 -1.831581e-03 -1.0312992 0.0077185376 1.363287 14 1.339719 -7.221336e-05 0.3309434 0.0031919612 4.079009 15 1.339858 -7.448647e-03 0.7004686 0.0205219405 2.161692 17 1.342169 -2.360876e-03 3.1073097 0.0046411318 6.341736 18 1.342165 9.527609e-03 1.4991652 0.0189294193 3.626960 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 386.14 co2l1 = 0.473 co2l0 = 0.092" [1] "co2l0 = -145.23 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "162 out of 450 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "288 out of 1217 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "288 out of 1217 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"