[1] "2025-04-29 21:41:26 MDT" [1] "1406" "140728" "d209" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140728a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85920 63 [1] 85920 [1] 85920 [1] "testing skipping spike filter" [1] 85920 [1] 85920 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:41:31 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.813, ave o2scale2 = 0.732" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.813, ave o2scale2 = 0.732" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "2025-04-29 21:41:31 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:41:31 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:41:51 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:41:53 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1430 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:41:58 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.6" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.473 co2off = 386 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.88 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 194 203 0.1359326 0.1421956 0.1397611 3 -19.60248 280.3295 1.232893 3 4 204 213 0.1428912 0.1491540 0.1467200 3 38.82564 136.0752 1.232819 4 3 214 223 0.1498495 0.1561125 0.1550695 3 19.01327 215.5046 1.232867 6 4 494 503 0.3446972 0.3509562 0.3485223 2 38.79669 135.6414 1.231626 7 2 504 513 0.3516517 0.3579144 0.3554791 2 -19.63027 280.7088 1.231735 8 5 514 523 0.3586100 0.3648728 0.3638288 NA 16.57156 193.7162 1.231593 10 2 794 803 0.5534271 0.5596905 0.5572548 3 -19.62637 281.0293 1.229901 11 4 804 813 0.5603856 0.5666482 0.5642139 3 38.78962 133.5518 1.229917 12 3 814 823 0.5673438 0.5736066 0.5725635 3 18.95835 212.9688 1.229843 14 4 1088 1096 0.7615440 0.7671111 0.7650248 2 38.75113 136.6705 1.228576 15 2 1097 1105 0.7678076 0.7733742 0.7712879 2 -19.68846 280.9087 1.228328 17 2 1388 1397 0.9703174 0.9765807 0.9741440 3 -19.80264 281.0179 1.225378 18 4 1398 1407 0.9772761 0.9835393 0.9811032 3 38.63598 138.2107 1.225185 19 5 1408 1417 0.9842346 0.9904977 0.9894543 NA 16.38406 198.1777 1.225216 20 3 1418 1427 0.9911932 0.9974572 0.9964138 3 18.82191 214.2878 1.225376 jfcv2 co2slp o2slp co2sd o2sd 2 1.368961 -0.003448840 0.68621960 0.010258802 2.175137 3 1.368876 0.005948555 0.06878464 0.017837991 1.487494 4 1.368953 -0.005199332 -0.84880447 0.016819112 1.490502 6 1.367587 -0.002019209 0.44034232 0.007229420 2.254016 7 1.367719 -0.002080653 0.36381935 0.014683330 2.085346 8 1.367566 -0.008613157 -1.94011034 0.006098796 2.739995 10 1.365713 -0.002244669 0.61664362 0.008188995 2.415156 11 1.365732 0.002746025 0.38120319 0.010738700 3.863428 12 1.365653 -0.003977188 3.08637781 0.010308735 4.024507 14 1.364282 -0.006020751 0.53615590 0.013724855 2.735114 15 1.364095 -0.003470434 0.58723690 0.008847575 1.340583 17 1.360810 -0.001493385 1.23166553 0.009765427 3.604883 18 1.360592 0.003861544 0.41000773 0.015765155 2.653551 19 1.360627 -0.010856905 1.21234946 0.007689786 1.606198 20 1.360794 -0.005906185 -1.21833321 0.016441452 1.782519 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 385.937 co2l1 = 0.473 co2l0 = 0.088" [1] "co2l0 = -143.59 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "133 out of 432 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "299 out of 1232 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "299 out of 1232 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"