[1] "2025-04-29 21:40:12 MDT" [1] "1406" "140726" "d207" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140726a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85684 63 [1] 85684 [1] 85684 [1] "testing skipping spike filter" [1] 85684 [1] 85684 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:40:16 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.809, ave o2scale2 = 0.729" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.809, ave o2scale2 = 0.729" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "2025-04-29 21:40:16 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:40:16 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:40:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:40:37 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1425 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:40:44 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.6" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.473 co2off = 385.84 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 69 78 0.04869097 0.05495373 0.05251893 3 -19.25534 288.3991 3 4 79 88 0.05564931 0.06191227 0.05947815 3 39.16158 135.0144 4 3 89 98 0.06260778 0.06887402 0.06782873 3 19.32937 214.3109 6 4 369 378 0.25746418 0.26372708 0.26129131 2 39.10523 141.6728 7 2 379 388 0.26442248 0.27069013 0.26825261 2 -19.31521 281.0171 9 2 669 678 0.46625975 0.47252303 0.47008641 3 -19.38812 282.7527 10 4 679 688 0.47321840 0.47948099 0.47704554 3 39.04945 138.9000 11 5 689 698 0.48017648 0.48643883 0.48539583 NA 16.85206 199.8302 12 3 699 708 0.48713429 0.49339711 0.49235406 3 19.23361 215.8930 14 4 966 975 0.67488084 0.68114086 0.67870656 2 39.02372 135.7273 15 2 976 985 0.68183620 0.68809945 0.68566506 2 -19.40493 284.8629 17 2 1266 1275 0.88364340 0.88990634 0.88746882 3 -19.39609 283.6256 18 4 1276 1285 0.89060185 0.89686473 0.89442800 3 39.01880 137.6124 19 3 1286 1295 0.89756019 0.90382297 0.90277993 3 19.21004 214.0116 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.239470 1.375882 -0.0018442843 0.29036433 0.011063279 8.636859 3 1.239254 1.375698 0.0062946963 -0.40894416 0.019456790 2.038923 4 1.239541 1.375994 -0.0032800638 -2.01837501 0.010067628 2.629562 6 1.238655 1.374898 -0.0003784839 1.10530553 0.006887078 8.130801 7 1.238955 1.375269 -0.0019390354 0.78441355 0.009198089 10.786236 9 1.236927 1.373187 -0.0015779790 -0.29697356 0.005515299 2.046591 10 1.236874 1.373129 0.0108658819 0.90999703 0.027225813 2.765522 11 1.237015 1.373262 -0.0086138737 1.41180239 0.006098796 2.121521 12 1.236940 1.373195 0.0010696837 -1.69730602 0.010577243 2.291554 14 1.235285 1.371372 -0.0010206568 0.99801369 0.003430431 2.848566 15 1.235333 1.371437 -0.0039693835 1.59560676 0.011612582 5.033762 17 1.233905 1.369859 -0.0061272162 -0.07689663 0.015853578 4.331846 18 1.233786 1.369728 0.0032469096 0.24195497 0.015746164 1.075562 19 1.233747 1.369685 0.0015396301 0.78163729 0.008572038 1.026402 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 385.788 co2l1 = 0.473 co2l0 = 0.087" [1] "co2l0 = -143.6 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "121 out of 200 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "79 out of 1243 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "79 out of 1243 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"