[1] "2025-04-29 21:34:45 MDT" [1] "1406" "140717" "d198" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140717a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:34:49 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.811, ave o2scale2 = 0.73" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "6 MR delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.811, ave o2scale2 = 0.73" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "8 RC delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "2025-04-29 21:34:49 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:34:49 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:35:08 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:35:09 MDT" [1] "reading in recalculated plot titles" [1] "Removed 8 row(s) with NAs in them ( most likely because WTDIFF > 1000 )" [1] "TEMP: 1428 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:35:13 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.7" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.472 co2off = 385.59 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 98 107 0.06957873 0.07583872 0.07340444 2 39.29273 136.3157 3 2 108 117 0.07653411 0.08279745 0.08036263 2 -19.17375 279.4719 4 5 118 127 0.08349300 0.08975842 0.08871317 NA 16.85362 195.4006 6 2 397 406 0.27836238 0.28462242 0.28218797 3 -19.07619 282.7943 7 4 407 416 0.28531780 0.29158096 0.28914516 3 39.36046 135.8780 8 3 417 426 0.29227627 0.29853892 0.29749546 3 19.52183 215.2906 10 4 697 706 0.48718524 0.49344800 0.49101296 2 39.59805 132.6880 11 2 707 716 0.49414352 0.50040628 0.49797218 2 -18.89418 281.0359 13 2 992 1001 0.69599213 0.70225544 0.69982072 3 -18.84226 283.5339 14 4 1002 1011 0.70295078 0.70921065 0.70677609 3 39.61197 135.9044 15 5 1012 1021 0.70990625 0.71616545 0.71512209 NA 17.36119 211.0452 16 3 1022 1031 0.71686082 0.72312037 0.72207727 3 19.81891 217.3490 18 4 1292 1301 0.90473843 0.91100231 0.90856726 2 39.69946 137.3462 19 2 1302 1311 0.91169777 0.91796065 0.91552649 2 -18.77639 282.1800 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.223896 1.358901 -0.0000609187 0.716225690 0.002047906 1.9905781 3 1.224277 1.359308 -0.0037871875 0.230187925 0.011117122 1.5850618 4 1.224234 1.359278 -0.0062165859 0.613207845 0.004419417 0.8171739 6 1.229281 1.364844 -0.0025389022 0.142941717 0.010593124 2.5014151 7 1.227879 1.363290 0.0001091034 -0.407574768 0.008208019 3.0642579 8 1.227550 1.362899 -0.0027840147 -0.539227488 0.010123443 1.1384899 10 1.235234 1.371219 0.0020341593 0.620217314 0.006778580 4.5114380 11 1.235188 1.371197 -0.0072717038 -0.022590911 0.021044103 3.6604564 13 1.238915 1.375305 0.0005318624 -0.361126660 0.004826965 3.6950416 14 1.238940 1.375326 0.0054448871 0.699623053 0.016011680 2.0120272 15 1.239170 1.375629 0.0003744072 5.490018302 0.000265165 9.2538919 16 1.239434 1.375870 -0.0026887562 -1.227579697 0.007707106 1.7624705 18 1.241022 1.377578 -0.0009750926 -0.351203982 0.006134826 2.7462340 19 1.241221 1.377811 -0.0077968612 0.009623746 0.019872241 6.4297228 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 385.584 co2l1 = 0.472 co2l0 = 0.085" [1] "co2l0 = -143.24 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "77 out of 1081 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "1004 out of 1236 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "1004 out of 1236 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"