[1] "2025-04-29 21:31:18 MDT" [1] "1406" "140711" "d192" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140711a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86100 63 [1] 86100 [1] 86100 [1] "testing skipping spike filter" [1] 86100 [1] 86100 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:31:22 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.812, ave o2scale2 = 0.731" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.812, ave o2scale2 = 0.731" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "2025-04-29 21:31:22 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:31:22 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:31:43 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:31:45 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1434 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:31:51 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.7" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.471 co2off = 384.19 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 21 30 0.01484152 0.02110454 0.01866981 3 -16.02534 279.3771 3 4 31 40 0.02179983 0.02806345 0.02562773 3 42.62895 114.0615 4 3 41 50 0.02875888 0.03502199 0.03397862 3 22.73335 203.6967 6 4 321 330 0.22359606 0.22985883 0.22742443 2 42.61722 134.2034 7 2 331 340 0.23055440 0.23681713 0.23438219 2 -16.02070 283.7688 9 2 621 630 0.43237671 0.43863984 0.43620323 3 -16.10373 278.1116 10 4 631 640 0.43933519 0.44559806 0.44316232 3 42.54289 138.1881 11 5 641 650 0.44629343 0.45255654 0.45151032 NA 20.09856 196.8218 12 3 651 660 0.45325191 0.45951073 0.45846773 3 22.64746 209.9282 14 4 921 930 0.64112940 0.64739236 0.64495752 2 42.42362 136.4950 15 2 931 940 0.64808773 0.65435064 0.65191514 2 -16.22370 281.9598 17 2 1219 1228 0.84952749 0.85578996 0.85335336 3 -16.38470 281.7552 18 4 1229 1238 0.85648637 0.86274957 0.86031276 3 42.26270 138.9252 19 3 1239 1248 0.86344494 0.86970816 0.86866488 3 22.37540 220.9922 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.231394 1.368025 0.002074240 -1.55250096 0.010766339 11.685819 3 1.231398 1.368136 0.001880101 2.40267630 0.014301979 23.884611 4 1.231609 1.368209 -0.004009394 11.88740908 0.010242644 15.558698 6 1.232495 1.368891 0.003758934 1.87279831 0.010877976 6.264499 7 1.232821 1.369259 -0.004701136 0.75736765 0.015156860 3.328771 9 1.232265 1.368804 -0.000834231 3.09229934 0.005381303 11.914392 10 1.232259 1.368820 0.005829686 -0.20754587 0.017281407 4.744440 11 1.232135 1.368675 -0.011539416 2.12725399 0.008220116 3.796010 12 1.232101 1.368594 -0.001271321 4.79493545 0.006700874 8.629340 14 1.231834 1.368261 0.001442634 0.06930886 0.004320063 6.037175 15 1.232211 1.368710 -0.001409661 -1.16455457 0.007369531 3.419472 17 1.231436 1.367816 -0.002805196 -2.03211798 0.010534263 6.938715 18 1.231194 1.367576 0.004973207 0.48166464 0.013451941 5.496038 19 1.231317 1.367678 0.002433307 -2.25861347 0.006265600 3.206691 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 384.245 co2l1 = 0.471 co2l0 = 0.075" [1] "co2l0 = -142.2 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "150 out of 460 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "310 out of 1252 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "310 out of 1252 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"