[1] "2025-04-29 21:30:42 MDT" [1] "1406" "140710" "d191" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140710a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85920 63 [1] 85920 [1] 85920 [1] "testing skipping spike filter" [1] 85920 [1] 85920 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:30:47 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.82, ave o2scale2 = 0.738" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.82, ave o2scale2 = 0.738" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 1000 )" [1] "2025-04-29 21:30:47 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:30:47 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:31:06 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:31:08 MDT" [1] "reading in recalculated plot titles" [1] "Removed 1 row(s) with LiCO2A spikes in them" [1] "TEMP: 1430 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:31:13 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.7" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.471 co2off = 384.24 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.06 minutes" [1] "Average Cal: 9.05 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.12 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 258 267 0.1799443 0.1862072 0.1837730 3 -16.24558 280.3835 1.211191 3 4 268 277 0.1869027 0.1931621 0.1907279 3 42.40504 133.1116 1.211440 4 5 278 287 0.1938576 0.2001204 0.1990771 NA 20.46550 202.8184 1.211703 5 3 288 297 0.2008168 0.2070828 0.2060366 3 22.53009 213.8861 1.211993 7 4 557 566 0.3883764 0.3946708 0.3922231 2 42.51760 136.2387 1.218042 8 2 567 576 0.3953699 0.4016597 0.3992138 2 -16.12354 281.2162 1.218354 10 2 856 865 0.5974536 0.6037854 0.6013246 3 -16.06563 269.4226 1.222759 11 4 866 875 0.6044847 0.6107809 0.6083322 3 42.58222 133.2972 1.222768 12 3 876 885 0.6114806 0.6177691 0.6167211 3 22.69189 213.6694 1.223254 14 4 1154 1163 0.8058438 0.8121390 0.8096899 2 42.62387 136.4599 1.226927 15 2 1164 1173 0.8128391 0.8191310 0.8166854 2 -16.01665 280.3396 1.227150 16 5 1174 1183 0.8198299 0.8261192 0.8250709 NA 20.71837 196.8391 1.227145 jfcv2 co2slp o2slp co2sd o2sd 2 1.345693 -0.0009243032 0.4125425 0.005031680 5.909059 3 1.345975 0.0033353613 0.1015691 0.010908607 6.522385 4 1.346284 -0.0014976288 -2.8117223 0.001060660 3.804000 5 1.346613 -0.0070136249 3.5168343 0.017856132 4.737320 7 1.353168 -0.0015490357 0.5552531 0.007003900 2.697051 8 1.353524 -0.0035677982 -0.4629339 0.014833410 2.603525 10 1.358520 0.0001948473 -1.0796685 0.007963155 4.790125 11 1.358554 0.0019248501 2.8580537 0.011056218 10.217395 12 1.359079 -0.0048041097 -1.9623609 0.012315819 2.800393 14 1.362985 0.0014021959 -0.3654218 0.007815250 1.805858 15 1.363223 -0.0025198629 0.4072241 0.013494457 4.396680 16 1.363203 -0.0067097416 -3.2211062 0.004772971 4.846704 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 384.222 co2l1 = 0.471 co2l0 = 0.075" [1] "co2l0 = -143.74 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "174 out of 250 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "76 out of 1263 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "76 out of 1263 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"