[1] "2025-04-29 21:22:06 MDT"
[1] "1406"   "140623" "d174"  
[1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140623a.hr"
[1] "reading in hr file header"
Read 27 items
[1] "Parsing HR flags"
[1] "Doing high rate calculations (mean, sd, slope, shape)"
[1] 10560    63
[1] 10560
[1] 10560
[1] "testing skipping spike filter"
[1] 10560
[1] 10560
[1] "recalculating jog averages"
[1] "recalculating jog sds"
[1] "recalculating jog slopes"
[1] "Parsing MR flags"
[1] "Calculating derived concentration values"
[1] "2025-04-29 21:22:06 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.823, ave o2scale2 = 0.743"
[1] "Removing 2 MR FC 1 jog(s) with WT SD > 1000"
[1] "Removing 4 MR FC 2 jog(s) with WT SD > 1000"
[1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000"
[1] "Removing 2 MR FC 2 jog(s) with SP SD > 1000"
[1] "30 MR delta diff NA values ( most likely because WTDIFF > 1000 )"
[1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.823, ave o2scale2 = 0.743"
[1] "Removing 3 RC FC 1 jog(s) with WT SD > 1000"
[1] "Removing 4 RC FC 2 jog(s) with WT SD > 1000"
[1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000"
[1] "Removing 2 RC FC 2 jog(s) with SP SD > 1000"
[1] "31 RC delta diff NA values ( most likely because WTDIFF > 1000 )"
[1] "2025-04-29 21:22:07 MDT"
[1] "Plotting 1-second data"
[1] "2025-04-29 21:22:07 MDT"
[1] "reading in high-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2025-04-29 21:22:08 MDT"
[1] "reading in medium-rate plot titles"
[1] "Plotting recalculated 1-minute data"
[1] "2025-04-29 21:22:09 MDT"
[1] "reading in recalculated plot titles"
[1] "Removed 31 row(s) with NAs in them ( most likely because WTDIFF > 1000 )"
[1] "Removed 144 row(s) with low FLWTA"
[1] "TEMP: 0 0 TRUE"
[1] "ALL DATA REMOVED"
[1] "making html"