[1] "2025-04-29 21:16:42 MDT" [1] "1404" "140516" "d136" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140516a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:16:46 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.804, ave o2scale2 = 0.732" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "4 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.804, ave o2scale2 = 0.732" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "6 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:16:47 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:16:47 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:17:01 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:17:02 MDT" [1] "reading in recalculated plot titles" [1] "Removed 6 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1430 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:17:08 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.8" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.41 co2off = 368.75 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.65 minutes" [1] "Shortest Cal: 7.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 250 259 0.1756910 0.1819544 0.1795178 3 76.131984 131.6303 1.245098 3 2 260 269 0.1826498 0.1889132 0.1864760 3 8.581180 276.2839 1.245258 4 3 270 279 0.1896088 0.1958715 0.1948264 3 52.927117 209.1081 1.245294 6 2 550 559 0.3844831 0.3907464 0.3883093 2 8.582469 274.4939 1.245976 7 4 560 569 0.3914419 0.3977049 0.3952684 2 76.141328 128.9341 1.245924 9 4 850 859 0.5932072 0.5994706 0.5970364 3 76.047352 130.1915 1.245196 10 2 860 868 0.6001659 0.6057303 0.6036438 3 8.740688 272.0500 1.245173 12 3 877 885 0.6147789 0.6203427 0.6196472 3 52.963723 207.1214 1.245190 14 2 1146 1155 0.8019502 0.8082131 0.8057783 2 8.815687 274.0455 1.243255 15 4 1156 1165 0.8089086 0.8151713 0.8127370 2 75.936531 129.0663 1.243124 jfcv2 co2slp o2slp co2sd o2sd 2 1.367742 -0.0047501532 0.4115168 0.013419101 2.061759 3 1.367923 -0.0044202971 -0.2125288 0.018924204 2.215804 4 1.367981 0.0038502591 1.9996245 0.010313092 3.896781 6 1.368777 -0.0062529523 0.8322395 0.015904921 4.203915 7 1.368730 0.0095412691 1.3820168 0.027997803 4.758957 9 1.367910 0.0005683481 0.3151831 0.004174345 4.332948 10 1.367978 -0.0061069935 1.2096960 0.015532225 3.655713 12 1.367862 0.0019704931 -0.8224208 0.005169630 1.540232 14 1.365900 -0.0049329699 1.0818940 0.012714850 2.982272 15 1.365752 0.0060830721 0.1529249 0.024622145 1.806973 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 373.087 co2l1 = 0.41 co2l0 = -0.197" [1] "co2l0 = -142.31 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1292 1-min values rejected as stack air" [1] "0 out of 1292 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"