[1] "2025-04-29 21:16:14 MDT" [1] "1404" "140515" "d135" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140515a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:16:18 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.809, ave o2scale2 = 0.736" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "12 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.809, ave o2scale2 = 0.736" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "14 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:16:19 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:16:19 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:16:31 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:16:33 MDT" [1] "reading in recalculated plot titles" [1] "Removed 14 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1422 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:16:37 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.8" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.415 co2off = 372.9 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.52 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 187 196 0.1318111 0.1380709 0.1356370 2 9.173602 273.8450 1.231545 3 4 197 206 0.1387663 0.1450295 0.1425954 2 75.554602 133.7294 1.231549 5 4 487 496 0.3405463 0.3468098 0.3443750 3 75.563898 130.5680 1.233950 6 2 497 505 0.3475051 0.3530728 0.3509862 3 9.182357 275.0232 1.233898 8 3 514 522 0.3621177 0.3676903 0.3669950 3 52.801893 209.8625 1.233949 10 2 783 792 0.5493448 0.5556076 0.5531721 2 9.173344 268.4677 1.236171 11 4 793 802 0.5563032 0.5625661 0.5601317 2 75.633680 126.8448 1.236177 13 4 1080 1089 0.7581239 0.7643870 0.7619518 3 75.875453 132.5676 1.239995 14 2 1090 1099 0.7650823 0.7713452 0.7689100 3 8.970328 275.5709 1.240314 15 3 1100 1109 0.7720407 0.7783034 0.7772604 3 52.848227 206.2372 1.240445 17 2 1379 1388 0.9668782 0.9731411 0.9707057 2 8.719164 274.0145 1.242264 18 4 1389 1397 0.9738365 0.9794039 0.9773172 2 75.998830 130.8523 1.242295 jfcv2 co2slp o2slp co2sd o2sd 2 1.353350 -0.0189068805 0.38686882 0.047285936 2.199823 3 1.353343 0.0157460748 -1.57980567 0.040908693 6.911758 5 1.355849 0.0007408122 -0.30715925 0.005237755 3.130881 6 1.355839 -0.0092576137 0.41572887 0.022433400 2.355792 8 1.355762 0.0017373530 -0.41229988 0.004339546 1.134904 10 1.358140 -0.0001037167 3.50038453 0.001873511 12.662312 11 1.358155 0.0020810644 -0.08448848 0.011782555 1.358661 13 1.362304 -0.0068316061 1.59868439 0.017291092 4.207546 14 1.362644 0.0013115794 -0.14690670 0.007258596 2.845855 15 1.362798 -0.0024062152 -1.59872158 0.009986259 2.803975 17 1.364682 0.0032152362 -0.04678293 0.010531889 3.071603 18 1.364718 0.0024728101 1.22435083 0.012951166 4.522411 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.896 co2l1 = 0.414 co2l0 = -0.216" [1] "co2l0 = -142.85 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "15 out of 40 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "25 out of 1240 1-min values rejected as stack air" [1] "25 out of 1240 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"