[1] "2025-04-29 21:15:48 MDT" [1] "1404" "140514" "d134" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140514a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85980 63 [1] 85980 [1] 85980 [1] "testing skipping spike filter" [1] 85980 [1] 85980 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:15:52 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.817, ave o2scale2 = 0.744" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "8 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.817, ave o2scale2 = 0.744" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "10 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:15:53 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:15:53 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:16:04 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:16:05 MDT" [1] "reading in recalculated plot titles" [1] "Removed 10 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1422 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:16:09 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.8" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.421 co2off = 372.63 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.55 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 124 133 0.08807679 0.09433961 0.09190277 3 74.959891 128.2576 3 2 134 142 0.09503495 0.10060266 0.09851412 3 9.605223 273.3978 5 3 151 159 0.10964418 0.11521178 0.11451619 3 52.603509 209.0955 7 2 416 425 0.29675810 0.30302083 0.30058598 2 9.709195 274.7562 8 4 426 435 0.30371644 0.30997995 0.30754561 2 74.991109 132.1574 10 4 716 725 0.50553941 0.51179873 0.50936464 3 75.204461 129.1587 11 2 726 735 0.51249453 0.51875767 0.51632045 3 9.617156 273.4283 12 3 736 745 0.51945307 0.52571638 0.52467201 3 52.597258 211.0044 14 2 1016 1025 0.71430093 0.72056808 0.71813040 2 9.206164 273.6676 15 4 1026 1034 0.72126345 0.72683084 0.72474148 2 75.404625 129.9651 18 4 1312 1321 0.92304951 0.92930906 0.92687439 3 75.502930 130.2674 19 2 1322 1331 0.93000775 0.93626646 0.93383256 3 9.155484 274.3469 20 3 1332 1341 0.93696201 0.94322497 0.94218197 3 52.758234 213.0179 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.219195 1.340173 0.0044567331 -1.32505101 0.012096143 3.7823280 3 1.219126 1.340172 -0.0106793060 0.71169326 0.026233672 2.7348316 5 1.219347 1.340266 0.0016962321 -0.09799066 0.004554849 0.2620112 7 1.220917 1.342034 -0.0091678262 0.34080908 0.023153347 2.0051648 8 1.220849 1.341973 0.0067782112 0.47895261 0.017533792 1.6833568 10 1.223510 1.344799 -0.0063608054 0.18643573 0.015964348 2.7058541 11 1.223759 1.345067 -0.0088422342 -0.26519547 0.022108423 2.3787720 12 1.223779 1.345088 -0.0006480312 1.82438910 0.010041679 2.5128946 14 1.226330 1.347822 -0.0033284825 1.33121485 0.009684587 5.4005508 15 1.226444 1.347960 0.0031196283 1.38923768 0.020770980 3.3794278 18 1.229678 1.351305 0.0109805037 0.30738071 0.027721076 4.5818691 19 1.229925 1.351582 0.0008734921 0.50657915 0.011209588 2.2483053 20 1.230163 1.351846 0.0013298129 0.22659131 0.005729656 1.0944378 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.676 co2l1 = 0.42 co2l0 = -0.223" [1] "co2l0 = -142.5 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "15 out of 55 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "40 out of 1222 1-min values rejected as stack air" [1] "40 out of 1222 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"