[1] "2025-04-29 21:15:22 MDT" [1] "1404" "140513" "d133" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140513a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:15:26 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.825, ave o2scale2 = 0.75" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "15 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.825, ave o2scale2 = 0.75" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "17 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:15:26 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:15:26 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:15:38 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:15:40 MDT" [1] "reading in recalculated plot titles" [1] "Removed 17 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1419 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:15:43 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.8" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.425 co2off = 377.36 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.79 minutes" [1] "Shortest Cal: 7.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 61 70 0.04427778 0.05054042 0.04810618 2 9.704719 274.8411 3 4 71 80 0.05123579 0.05749873 0.05506442 2 74.825047 133.7126 5 4 354 363 0.25305894 0.25932185 0.25688524 3 74.711758 133.7568 6 2 364 373 0.26001739 0.26628067 0.26384517 3 9.954758 273.3256 7 3 374 383 0.26697607 0.27323941 0.27219615 3 52.428023 210.1842 9 2 653 662 0.46181481 0.46807781 0.46564195 2 9.874602 271.1980 10 4 663 671 0.46877321 0.47434106 0.47225358 2 74.748170 126.9891 13 4 948 957 0.67059265 0.67685570 0.67441868 3 74.901266 131.5995 14 2 958 967 0.67755104 0.68381082 0.68137640 3 9.779172 273.2702 15 3 968 977 0.68450616 0.69077315 0.68973006 3 52.548312 208.7547 17 2 1246 1255 0.87931950 0.88558235 0.88314757 2 9.720797 269.9404 18 4 1256 1265 0.88627778 0.89254065 0.89010656 2 74.902000 128.6023 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.213852 1.334477 -0.0059035704 0.009149354 0.016296191 2.6588549 3 1.213390 1.333983 0.0062954637 1.759861324 0.018869788 5.3264341 5 1.209458 1.329796 -0.0064183659 0.549146789 0.016433016 5.4940739 6 1.209300 1.329590 -0.0041399160 0.958916658 0.011913820 2.7906222 7 1.209059 1.329330 0.0024902900 0.691770816 0.009678766 0.9614177 9 1.210336 1.330649 0.0061035316 0.131185464 0.015566782 2.6083262 10 1.210267 1.330611 0.0004829710 0.980367733 0.009733006 3.1906605 13 1.214433 1.335120 0.0054810395 1.555318467 0.014539000 5.6377391 14 1.214762 1.335468 0.0011440088 0.803598275 0.008436987 2.3313130 15 1.214810 1.335529 -0.0009812557 -5.102154366 0.008862164 6.6247423 17 1.216527 1.337267 -0.0073583693 -0.375739892 0.019702864 4.5257211 18 1.216667 1.337436 0.0049843958 0.995712254 0.016952435 5.8875264 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.475 co2l1 = 0.425 co2l0 = -0.241" [1] "co2l0 = -143.1 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "208 out of 845 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "637 out of 1240 1-min values rejected as stack air" [1] "637 out of 1240 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"