[1] "2025-04-29 21:14:56 MDT" [1] "1404" "140512" "d132" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140512a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:15:00 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.823, ave o2scale2 = 0.749" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "397 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.823, ave o2scale2 = 0.749" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "398 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:15:00 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:15:00 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:15:13 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:15:14 MDT" [1] "reading in recalculated plot titles" [1] "Removed 398 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1037 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:15:17 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.8" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.421 co2off = 372.7 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.02 minutes" [1] "Average Cal: 6.17 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 3 [3,] 4 5 [4,] 6 7 [5,] 8 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 5 0.008685185 0.01216641 0.01123912 2 9.351872 278.5357 2 3 6 7 0.019820081 0.02051534 0.03107151 2 52.340000 224.1861 4 4 103 104 0.216767361 0.21746296 0.22094404 1 75.309375 144.5575 7 4 227 236 0.417869184 0.42412928 0.42169454 2 75.041789 132.1125 8 2 237 244 0.424824363 0.42969274 0.42795414 2 9.497979 271.2564 11 2 505 514 0.626616001 0.63287616 0.63044145 2 9.351484 273.6024 12 4 515 524 0.633571615 0.63983449 0.63739803 2 75.194586 129.5071 14 4 805 814 0.835362211 0.84162500 0.83918810 3 75.059352 130.1368 15 2 815 823 0.842320602 0.84788426 0.84579769 3 9.426688 269.3474 17 3 832 840 0.856934693 0.86250211 0.86180470 3 52.538232 211.8336 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.217167 1.338060 -0.0026863582 0.06929205 0.004126934 0.1121846 2 1.217067 1.337835 -0.0843321420 -0.05889956 0.298929392 7.0329069 4 1.210182 1.330732 0.1027130816 3.20966388 0.728143208 22.7536251 7 1.215559 1.336271 -0.0045048556 0.58848975 0.011476973 3.1693890 8 1.215594 1.336315 -0.0026528865 0.64069796 0.009780614 2.7369068 11 1.218556 1.339553 0.0025153324 0.87062113 0.012852127 2.5891476 12 1.218628 1.339633 -0.0000717746 0.99932574 0.009539388 3.6645005 14 1.216250 1.337054 0.0055852474 0.58723650 0.014737773 2.0963164 15 1.216266 1.337134 0.0001651864 0.42040154 0.009223639 2.2829323 17 1.215976 1.336663 -0.0077359373 -5.07313413 0.017449507 5.0961255 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.584 co2l1 = 0.423 co2l0 = -0.217" [1] "co2l0 = -147.5 co2l1 = 0.24" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "51 out of 365 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "314 out of 890 1-min values rejected as stack air" [1] "314 out of 890 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"