[1] "2025-04-29 21:12:17 MDT" [1] "1404" "140506" "d126" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140506a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85920 63 [1] 85920 [1] 85920 [1] "testing skipping spike filter" [1] 85920 [1] 85920 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:12:21 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.823, ave o2scale2 = 0.749" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "34 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.823, ave o2scale2 = 0.749" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "34 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:12:21 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:12:21 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:12:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:12:37 MDT" [1] "reading in recalculated plot titles" [1] "Removed 34 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1396 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:12:41 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.8" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.42 co2off = 367.97 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.03 minutes" [1] "Average Cal: 8.48 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.08 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 135 140 0.1016100 0.1050914 0.1040482 3 9.617484 282.9699 1.208373 3 4 141 150 0.1057871 0.1120498 0.1096147 3 74.519781 129.4911 1.208112 4 3 151 160 0.1127454 0.1190081 0.1179648 3 52.240695 213.0206 1.208220 6 4 423 432 0.3076169 0.3138842 0.3114471 2 74.775313 133.7991 1.212216 7 2 433 442 0.3145798 0.3208519 0.3184096 2 9.355328 271.2668 1.212325 9 2 722 731 0.5167002 0.5230024 0.5205521 3 9.141766 271.5431 1.215047 10 4 732 740 0.5237023 0.5293030 0.5272017 3 74.904045 133.6641 1.215160 12 3 749 757 0.5384057 0.5440046 0.5433042 3 52.368062 208.0309 1.215537 14 4 1009 1018 0.7252836 0.7315834 0.7291330 2 75.059875 129.5980 1.219903 15 2 1019 1028 0.7322833 0.7385822 0.7361340 2 8.938031 274.4376 1.220027 19 2 1302 1311 0.9338375 0.9401420 0.9376907 3 8.881563 273.4240 1.222524 20 4 1312 1321 0.9408422 0.9471395 0.9446900 3 75.071992 131.7542 1.222488 21 3 1322 1331 0.9478426 0.9541412 0.9530921 3 52.364555 206.9843 1.222482 jfcv2 co2slp o2slp co2sd o2sd 2 1.328451 0.0001932695 2.634534612 0.003910581 3.6307917 3 1.328167 0.0028786492 0.113033454 0.011315287 2.8810343 4 1.328316 -0.0070997630 -2.014594078 0.017700429 2.8929266 6 1.332434 -0.0020309350 -4.048908834 0.007014017 12.6987838 7 1.332536 -0.0057762915 -1.013427115 0.015799093 4.9612445 9 1.335603 -0.0003439933 0.005262326 0.008717270 5.3639726 10 1.335661 0.0080928916 -3.105920841 0.022478048 7.5175150 12 1.336209 -0.0075729726 -0.646509174 0.017149807 0.9487383 14 1.340952 0.0066110076 1.677594688 0.016720456 5.7267033 15 1.341002 0.0021856313 -2.373216527 0.012911486 14.7496640 19 1.343863 -0.0090048235 0.926862244 0.022878732 2.9217897 20 1.343836 0.0068316005 1.263361701 0.021647115 4.2734773 21 1.343834 0.0010447087 0.136217609 0.003273343 0.9400624 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.786 co2l1 = 0.421 co2l0 = -0.207" [1] "co2l0 = -142.99 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "150 out of 528 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "378 out of 1218 1-min values rejected as stack air" [1] "333 out of 1162 Line 1 1-min values rejected as stack air" [1] "45 out of 56 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"