[1] "2025-04-29 21:11:47 MDT" [1] "1404" "140505" "d125" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140505a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:11:51 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.832, ave o2scale2 = 0.757" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "55 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.832, ave o2scale2 = 0.757" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "55 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:11:52 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:11:52 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:12:05 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:12:07 MDT" [1] "reading in recalculated plot titles" [1] "Removed 55 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1381 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:12:12 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.8" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.427 co2off = 377.78 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.3 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 68 77 0.05501403 0.06127743 0.05884171 2 74.344406 131.2963 3 2 78 87 0.06197280 0.06823582 0.06580107 2 9.728016 271.9884 5 2 367 376 0.26378472 0.27006490 0.26762696 3 9.668961 275.8650 6 4 377 385 0.27076050 0.27632459 0.27423825 3 74.317116 125.1865 8 3 394 402 0.28537370 0.29094097 0.29024556 3 52.200179 208.0923 10 4 656 665 0.47255405 0.47881713 0.47638209 2 74.234156 133.0830 11 2 666 675 0.47951273 0.48577561 0.48334151 2 9.692266 278.7394 13 2 948 957 0.68129034 0.68755359 0.68511681 2 9.707547 279.7725 14 4 958 964 0.68824899 0.69450926 0.69186597 2 74.345398 129.1669 17 4 1234 1242 0.89004722 0.89631010 0.89402431 2 74.417323 132.2328 18 2 1243 1251 0.89700538 0.90256950 0.90048271 2 9.698991 268.8903 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.200901 1.320170 0.004789201 -0.9234232 0.014101513 5.177747 3 1.201277 1.320565 -0.005461956 0.9884808 0.015240767 3.045358 5 1.201788 1.321093 -0.010305468 2.1358744 0.026477415 6.242464 6 1.201641 1.320977 0.009806817 -3.3222159 0.022270602 12.476090 8 1.201634 1.320820 0.003234586 -2.8446440 0.009306306 2.855218 10 1.199846 1.319072 0.003351965 4.5872895 0.009816509 12.392062 11 1.199774 1.318984 -0.010674549 -0.7677245 0.027884583 9.147855 13 1.201412 1.320763 -0.008145650 0.9841579 0.020764860 3.154827 14 1.201274 1.320675 0.011774019 0.9736576 0.039634940 3.213594 17 1.204292 1.323918 -0.007739665 1.9702733 0.020735985 5.468439 18 1.204359 1.324053 -0.009829767 0.4350659 0.021434628 3.670260 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.485 co2l1 = 0.427 co2l0 = -0.196" [1] "co2l0 = -142.32 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "36 out of 160 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "124 out of 1206 1-min values rejected as stack air" [1] "124 out of 1206 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"