[1] "2025-04-29 21:10:50 MDT" [1] "1404" "140503" "d123" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140503a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85793 63 [1] 85793 [1] 85793 [1] "testing skipping spike filter" [1] 85793 [1] 85793 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:10:54 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.822, ave o2scale2 = 0.748" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "91 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.822, ave o2scale2 = 0.748" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "90 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:10:55 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:10:55 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:11:09 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:11:10 MDT" [1] "reading in recalculated plot titles" [1] "Removed 90 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1338 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:11:14 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.8" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.421 co2off = 372.83 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 8.38 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 252 261 0.1761019 0.1823657 0.1799284 3 9.175367 273.2066 1.218582 3 4 262 271 0.1830613 0.1893245 0.1868888 3 74.856148 130.3893 1.218392 4 3 272 280 0.1900200 0.1955845 0.1948890 3 52.314929 212.6453 1.218082 6 4 521 530 0.3848970 0.3911598 0.3887256 2 74.914320 129.9339 1.217714 7 2 531 539 0.3918553 0.3974199 0.3953333 2 9.013830 274.2531 1.217793 10 2 798 806 0.5942329 0.5998001 0.5977139 3 9.262589 273.2420 1.216277 11 4 807 814 0.6004955 0.6067587 0.6040924 3 74.845802 127.3689 1.216319 12 3 815 823 0.6074540 0.6137141 0.6130184 3 52.354491 211.7123 1.215948 15 4 1087 1095 0.8029876 0.8085553 0.8064688 2 74.733089 132.2911 1.212544 16 2 1096 1104 0.8092509 0.8148229 0.8127333 2 9.357429 271.3353 1.212474 jfcv2 co2slp o2slp co2sd o2sd 2 1.339606 -0.0046939851 0.8941092 0.011901026 2.915386 3 1.339381 0.0106783441 0.1668062 0.028164554 2.264452 4 1.338980 0.0014194581 0.3097667 0.005723607 1.368691 6 1.338585 0.0049139321 1.1698073 0.012175862 3.079612 7 1.338608 -0.0003967947 0.1993187 0.010195084 3.940108 10 1.337013 -0.0037601878 0.7256898 0.008812563 3.147071 11 1.337056 0.0062508876 2.8277643 0.026872367 9.256590 12 1.336556 0.0039316840 7.0421237 0.012959525 7.081743 15 1.332861 0.0081376246 0.6312892 0.023405196 4.588240 16 1.332844 -0.0097499403 2.9292345 0.021487534 6.780945 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.772 co2l1 = 0.421 co2l0 = -0.209" [1] "co2l0 = -142.7 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "77 out of 700 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "623 out of 1187 1-min values rejected as stack air" [1] "417 out of 981 Line 1 1-min values rejected as stack air" [1] "206 out of 206 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"