[1] "2025-04-29 21:09:35 MDT" [1] "1404" "140429" "d119" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140429a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:09:39 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.815, ave o2scale2 = 0.742" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "20 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.815, ave o2scale2 = 0.742" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "20 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:09:40 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:09:40 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:09:54 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:09:55 MDT" [1] "reading in recalculated plot titles" [1] "Removed 20 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1416 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:09:59 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.8" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.414 co2off = 362.23 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.09 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 5 0.001437500 0.00421901 0.003523688 2 75.621583 131.2265 2 3 6 14 0.004914381 0.01048183 0.009786507 2 52.572670 210.2881 5 4 282 291 0.199728038 0.20598793 0.203553440 2 75.632336 129.5412 6 2 292 301 0.206683594 0.21294280 0.210508615 2 8.376781 275.1756 9 2 579 587 0.409127315 0.41470923 0.412621143 3 8.479223 274.7468 10 4 588 596 0.415404630 0.42096849 0.418881928 3 75.475839 130.7477 12 3 605 612 0.430009635 0.43487847 0.434530686 3 52.501823 208.1429 15 4 870 879 0.617142477 0.62340231 0.620968160 2 75.179992 128.7364 16 2 880 889 0.624097598 0.63035764 0.627923159 2 8.776852 276.8950 18 2 1167 1176 0.825827575 0.83208704 0.829653071 3 9.179773 279.0431 19 4 1177 1186 0.832782841 0.83904271 0.836608218 3 74.854984 130.5938 20 3 1187 1196 0.839738079 0.84599734 0.844954130 3 52.310711 204.0753 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.234416 1.356439 6.245228e-05 -1.0407217 0.0006884463 1.190291 2 1.234549 1.356441 -5.331001e-03 -0.7573223 0.0123125906 0.758336 5 1.233418 1.355202 -1.352786e-03 -0.2428654 0.0071308667 4.102218 6 1.233676 1.355488 9.115472e-03 0.9085066 0.0239836254 3.031608 9 1.230544 1.352092 2.835318e-03 -1.0854897 0.0086721880 3.303941 10 1.230451 1.351889 1.067070e-02 0.6947016 0.0291161435 1.891874 12 1.229984 1.351475 -5.203851e-03 -4.7810624 0.0100437649 3.386215 15 1.224329 1.345271 -1.998316e-04 0.6401125 0.0100529534 1.746767 16 1.224150 1.345081 -6.377411e-03 0.4503211 0.0167823162 2.729901 18 1.216605 1.336842 -7.974016e-03 1.2259230 0.0197967896 3.522288 19 1.216216 1.336430 8.310756e-03 1.6913640 0.0248347833 4.697568 20 1.216358 1.336583 5.729888e-03 1.2531323 0.0158736268 1.815849 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 373.208 co2l1 = 0.412 co2l0 = -0.196" [1] "co2l0 = -141.81 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "116 out of 562 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "446 out of 1252 1-min values rejected as stack air" [1] "296 out of 991 Line 1 1-min values rejected as stack air" [1] "150 out of 261 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"