[1] "2025-04-29 21:08:12 MDT" [1] "1404" "140426" "d116" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140426a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85933 63 [1] 85933 [1] 85933 [1] "testing skipping spike filter" [1] 85933 [1] 85933 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:08:16 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.815, ave o2scale2 = 0.742" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "160 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.815, ave o2scale2 = 0.742" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "162 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:08:16 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:08:16 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:08:31 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:08:32 MDT" [1] "reading in recalculated plot titles" [1] "Removed 162 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1269 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:08:36 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.8" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.414 co2off = 383.86 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.87 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 89 98 0.06956134 0.07582075 0.07338642 2 8.048758 271.1385 4 3 102 109 0.08486227 0.08973032 0.08938257 2 52.633073 209.9970 6 4 364 373 0.27827028 0.28453009 0.28209558 2 75.563250 131.6167 7 2 374 382 0.28522569 0.29079016 0.28870308 2 8.401589 271.2174 10 2 638 647 0.48695773 0.49321759 0.49078303 3 8.625359 274.5121 11 4 648 657 0.49391317 0.50017595 0.49774048 3 75.471211 127.5201 12 3 658 667 0.50087156 0.50713435 0.50609125 3 52.539703 204.9048 14 4 919 928 0.69567677 0.70193634 0.69950181 2 75.341664 131.0307 15 2 929 937 0.70263192 0.70889468 0.70650838 2 8.822185 275.7887 19 2 1173 1182 0.90405197 0.91031134 0.90787688 2 8.774898 274.5390 20 4 1183 1191 0.91100694 0.91657063 0.91448407 2 75.216982 129.7699 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.238572 1.360352 0.0008742264 0.3233638 0.007341513 2.8010051 4 1.236898 1.358564 -0.0067534543 -1.3034368 0.013125084 0.9230899 6 1.228141 1.349161 -0.0038225416 1.9536458 0.009978157 5.5279920 7 1.227966 1.349020 -0.0061436446 0.8955514 0.015701722 2.2519728 10 1.225906 1.346856 -0.0015777402 2.3553850 0.005590744 6.7887491 11 1.225402 1.346239 0.0074897808 1.4282072 0.020325695 4.5263927 12 1.225348 1.346227 -0.0036014998 -6.8585302 0.010970524 9.0321923 14 1.222757 1.343447 -0.0061263722 0.2268438 0.016799864 3.2652987 15 1.222596 1.343326 0.0003965279 1.3100282 0.005442737 4.8336222 19 1.219702 1.340281 0.0065456423 1.2064143 0.018196348 3.6940034 20 1.219328 1.339856 0.0088657616 1.0526852 0.024422009 3.3575282 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 373.1 co2l1 = 0.413 co2l0 = -0.195" [1] "co2l0 = -143.25 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "64 out of 410 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "346 out of 1075 1-min values rejected as stack air" [1] "298 out of 1027 Line 1 1-min values rejected as stack air" [1] "48 out of 48 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"