[1] "2025-04-29 21:07:41 MDT" [1] "1404" "140425" "d115" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140425a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86040 63 [1] 86040 [1] 86040 [1] "testing skipping spike filter" [1] 86040 [1] 86040 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:07:45 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.803, ave o2scale2 = 0.731" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "65 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.803, ave o2scale2 = 0.731" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "65 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:07:46 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:07:46 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:08:01 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:08:03 MDT" [1] "reading in recalculated plot titles" [1] "Removed 65 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1368 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:08:07 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.8" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.405 co2off = 377.92 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.48 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 37 45 0.02694337 0.03254089 0.03044156 2 75.980259 124.6269 3 2 46 54 0.03324089 0.03880509 0.03671857 2 8.174973 276.6423 6 2 329 338 0.23479013 0.24105324 0.23861793 3 7.967625 278.9033 7 4 339 348 0.24174876 0.24801157 0.24557705 3 76.119156 131.5839 8 3 349 358 0.24870712 0.25496664 0.25392359 3 52.733906 214.9243 10 4 629 638 0.44348383 0.44974389 0.44730952 2 76.162750 129.1098 11 2 639 648 0.45043932 0.45670211 0.45426512 2 7.902672 272.5378 13 2 909 918 0.65216887 0.65842824 0.65599378 2 7.906148 272.6794 14 4 919 927 0.65912378 0.66468747 0.66260088 2 76.204500 126.3042 17 4 1178 1187 0.86087500 0.86713417 0.86469980 2 76.253484 129.7838 18 2 1188 1197 0.86782951 0.87409245 0.87165583 2 7.787891 263.0368 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.239081 1.360962 0.0065996989 2.4632318 0.014553799 5.530179 3 1.239525 1.361367 -0.0046912995 1.4051035 0.010561135 3.177242 6 1.245040 1.367364 -0.0118751840 1.3657552 0.029356035 4.509371 7 1.244780 1.367068 0.0151359691 1.8887904 0.038501275 5.896676 8 1.244711 1.366977 0.0009761185 2.8774977 0.003206439 4.828167 10 1.247463 1.370020 0.0013340268 0.2425598 0.013199110 6.815754 11 1.247293 1.369815 -0.0046920309 -0.5787401 0.012582130 3.478391 13 1.247272 1.369838 0.0014568537 -0.0224080 0.005222818 3.237048 14 1.247285 1.369843 0.0034856933 1.7503302 0.012905960 4.398772 17 1.247251 1.369746 -0.0029778534 0.1470825 0.016454712 6.284294 18 1.247142 1.369664 -0.0008959999 -0.3814004 0.007356647 7.729123 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 373.412 co2l1 = 0.405 co2l0 = -0.182" [1] "co2l0 = -142.01 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "33 out of 120 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "87 out of 1183 1-min values rejected as stack air" [1] "87 out of 1183 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"