[1] "2025-04-29 21:07:15 MDT" [1] "1404" "140424" "d114" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140424a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:07:19 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.805, ave o2scale2 = 0.733" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "95 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.805, ave o2scale2 = 0.733" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "95 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:07:20 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:07:20 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:07:32 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:07:34 MDT" [1] "reading in recalculated plot titles" [1] "Removed 95 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1341 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:07:37 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.8" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.407 co2off = 384.91 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.51 minutes" [1] "Average Cal: 7.76 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 3 4 254 263 0.1914616 0.1977210 0.1952866 2 76.190859 127.4028 1.246622 4 2 264 272 0.1991119 0.2046794 0.2025914 2 7.990902 270.1553 1.246856 6 2 526 535 0.4001613 0.4064206 0.4039864 3 8.084687 275.5277 1.247377 7 4 536 544 0.4071168 0.4126805 0.4105939 3 76.158571 128.8851 1.247469 9 3 553 560 0.4217219 0.4265903 0.4262425 3 52.773677 212.3197 1.246965 11 4 814 820 0.6088356 0.6137040 0.6120348 2 76.068510 129.9770 1.239000 12 2 821 830 0.6157908 0.6220501 0.6196160 2 8.397563 271.9715 1.238869 14 2 1079 1088 0.8175043 0.8237639 0.8213294 3 8.262156 270.4448 1.237079 15 4 1089 1098 0.8244593 0.8307182 0.8282841 3 75.841070 131.4591 1.237141 16 3 1099 1108 0.8314137 0.8376726 0.8366296 3 52.688703 216.2729 1.237340 jfcv2 co2slp o2slp co2sd o2sd 3 1.369073 -0.002397961 -0.5053015 0.011143932 3.516756 4 1.369388 -0.009428715 0.6811497 0.020638722 2.672423 6 1.370019 0.012145733 1.1721770 0.030654559 3.661307 7 1.370109 0.001155962 -1.3161251 0.018959745 3.416472 9 1.369569 -0.004695404 3.2077217 0.014764686 2.271699 11 1.360941 -0.010103705 0.4683583 0.021478205 1.781416 12 1.360776 0.006797824 0.8414827 0.018977254 3.179756 14 1.358877 -0.003586406 0.7298803 0.014962789 2.694008 15 1.358914 0.005953179 -1.2569717 0.017260686 4.028057 16 1.359125 -0.002064113 -0.6390823 0.008632356 1.749334 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 373.313 co2l1 = 0.407 co2l0 = -0.187" [1] "co2l0 = -142.67 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "60 out of 205 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "145 out of 1197 1-min values rejected as stack air" [1] "145 out of 1197 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"