[1] "2025-04-29 21:06:46 MDT" [1] "1404" "140423" "d113" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140423a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:06:50 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.801, ave o2scale2 = 0.729" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "135 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.801, ave o2scale2 = 0.729" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "132 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:06:51 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:06:51 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:07:06 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:07:07 MDT" [1] "reading in recalculated plot titles" [1] "Removed 132 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1304 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:07:10 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.9" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.403 co2off = 386.13 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.01 minutes" [1] "Average Cal: 7.68 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 184 192 0.1487522 0.1543163 0.1522297 3 7.759732 272.4597 1.248788 3 4 193 201 0.1550117 0.1605760 0.1584894 3 76.351054 132.8329 1.248747 5 3 210 218 0.1696215 0.1751861 0.1744904 3 52.781795 208.6761 1.248667 9 4 439 443 0.3595336 0.3623155 0.3616201 2 76.338417 118.8601 1.247397 10 2 444 452 0.3637063 0.3699660 0.3673827 2 7.868968 276.1733 1.248082 14 2 708 717 0.5654269 0.5716898 0.5692534 3 7.700195 274.8865 1.248438 15 4 718 727 0.5723854 0.5786448 0.5762105 3 76.361117 127.2768 1.248443 16 3 728 737 0.5793403 0.5855996 0.5845564 3 52.841039 207.7890 1.248730 18 4 990 994 0.7754905 0.7803587 0.7789677 2 76.358716 112.1322 1.249202 19 2 995 1003 0.7810543 0.7866181 0.7845315 2 7.759473 275.2308 1.249471 22 2 1280 1289 0.9827743 0.9890332 0.9865990 2 7.799617 272.2123 1.251352 23 4 1290 1299 0.9897285 0.9959876 0.9935537 2 76.377570 127.9951 1.251360 jfcv2 co2slp o2slp co2sd o2sd 2 1.371439 0.0026608733 1.74796720 0.007716976 5.525472 3 1.371330 0.0007667552 1.76437262 0.013797193 6.433332 5 1.371350 -0.0031380260 7.85156215 0.009981083 8.053533 9 1.369803 -0.0030583901 -14.73302705 0.003340877 14.765186 10 1.370552 -0.0019185572 1.41887611 0.008669052 3.736154 14 1.370960 -0.0037627888 2.05891574 0.010481832 5.381158 15 1.370974 0.0022561367 -0.22751840 0.011683581 1.986555 16 1.371263 0.0013276313 -0.10704010 0.008690932 2.829561 18 1.371694 -0.0014815384 -3.27193686 0.004131432 8.829110 19 1.371864 -0.0055918727 -0.08448656 0.015532931 4.632413 22 1.374064 -0.0049310164 1.28944058 0.013249850 4.030736 23 1.374067 0.0093414047 0.54947735 0.025973833 3.444825 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 373.507 co2l1 = 0.403 co2l0 = -0.172" [1] "co2l0 = -140 co2l1 = 0.213" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "61 out of 540 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "479 out of 1123 1-min values rejected as stack air" [1] "342 out of 964 Line 1 1-min values rejected as stack air" [1] "137 out of 159 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"