[1] "2025-04-29 21:06:18 MDT" [1] "1404" "140422" "d112" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140422a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:06:22 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.8, ave o2scale2 = 0.729" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "35 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.8, ave o2scale2 = 0.729" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "35 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:06:22 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:06:22 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:06:37 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:06:38 MDT" [1] "reading in recalculated plot titles" [1] "Removed 35 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1401 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:06:42 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.9" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.402 co2off = 362.79 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.25 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 150 159 0.1045992 0.1108619 0.1084272 2 76.548406 128.7868 1.251397 3 2 160 169 0.1115598 0.1178264 0.1153896 2 7.666031 272.8822 1.251334 5 2 447 456 0.3133156 0.3195747 0.3171406 3 7.692461 269.3971 1.249916 6 4 457 466 0.3202705 0.3265332 0.3240959 3 76.584672 135.7908 1.249794 7 3 467 476 0.3272291 0.3334885 0.3324451 3 53.002586 209.6324 1.249694 9 4 744 752 0.5219861 0.5282490 0.5256628 2 76.483417 128.9775 1.248197 10 2 753 761 0.5289445 0.5345083 0.5324221 2 7.778643 274.1662 1.248298 13 2 1028 1037 0.7306667 0.7369300 0.7344930 3 7.926398 274.0593 1.248707 14 4 1038 1047 0.7376256 0.7438847 0.7414505 3 76.326055 128.4452 1.248486 15 3 1048 1057 0.7445801 0.7508392 0.7497961 3 52.857344 205.1063 1.248396 17 4 1328 1337 0.9393438 0.9456030 0.9431691 1 76.402062 133.2767 1.248461 jfcv2 co2slp o2slp co2sd o2sd 2 1.374812 -0.0027130043 0.2864033 0.007685576 5.9690061 3 1.374741 -0.0067705989 -1.6116846 0.021285003 8.7137250 5 1.373017 0.0048223435 0.9405321 0.011946119 2.9343413 6 1.372890 0.0018249773 4.9804193 0.015849802 13.3168369 7 1.372769 0.0045797612 2.8696677 0.013631467 3.8200541 9 1.371094 0.0028535252 1.9409313 0.008457482 5.1895815 10 1.371180 -0.0082074598 2.9191189 0.020319637 6.4628054 13 1.371523 0.0013662046 1.8065302 0.007063167 5.9071069 14 1.371259 0.0025194569 1.4448251 0.013622806 3.7804938 15 1.371137 -0.0006806763 -0.4198647 0.008660447 0.8607657 17 1.371083 -0.0044574278 1.8208407 0.014205287 4.7969112 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 373.485 co2l1 = 0.402 co2l0 = -0.169" [1] "co2l0 = -142.66 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "258 out of 555 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "297 out of 1230 1-min values rejected as stack air" [1] "297 out of 1230 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"