[1] "2025-04-29 21:05:50 MDT" [1] "1404" "140421" "d111" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140421a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85920 63 [1] 85920 [1] 85920 [1] "testing skipping spike filter" [1] 85920 [1] 85920 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:05:54 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.794, ave o2scale2 = 0.723" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "23 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.794, ave o2scale2 = 0.723" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "23 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:05:55 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:05:55 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:06:08 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:06:10 MDT" [1] "reading in recalculated plot titles" [1] "Removed 23 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1169 row(s) with high PFRIDGE" [1] "TEMP: 238 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:06:14 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.9" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.395 co2off = 369.54 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.04 minutes" [1] "Average Cal: 57.05 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 299.62 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 7 [4,] 8 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 9 0.06204167 0.0676088 0.06552260 3 6.993223 274.7138 2 4 10 19 0.06830440 0.0745640 0.07212980 3 77.213164 128.6101 3 3 20 28 0.07525926 0.0808235 0.08012815 3 53.186259 202.7911 4 4 29 37 0.27075883 0.2763229 0.27423634 2 77.146321 129.9341 5 2 38 55 0.27701843 0.4850556 0.39398689 2 7.102091 274.9666 6 4 56 65 0.48575564 0.4920502 0.48960189 2 77.110992 128.3275 7 3 66 74 0.49275064 0.4983547 0.49765532 2 53.114116 203.8768 9 2 84 100 0.69425935 0.9023275 0.80532899 3 7.475230 270.8214 10 4 101 110 0.90302801 0.9093206 0.90687363 3 76.770117 131.8319 11 5 111 120 0.91001970 0.9163159 0.91526677 NA 50.891500 196.6843 12 3 121 130 0.91701565 0.9233080 0.92225932 3 52.999953 215.3899 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.264138 1.388868 0.0100063315 -0.525402258 0.023654189 2.288100 2 1.263894 1.388515 -0.0018192390 1.562098610 0.014879349 4.536362 3 1.263823 1.388392 0.0057635189 -1.962092660 0.014363239 2.064597 4 1.262760 1.387379 0.0015489866 0.532717905 0.005033408 3.359692 5 1.261863 1.386349 -0.0001974032 -0.005492148 0.031830709 6.259542 6 1.260984 1.385446 -0.0026160184 0.286685996 0.013056045 3.148098 7 1.260815 1.385371 0.0019860603 -2.579986773 0.010402163 2.898028 9 1.256260 1.380162 0.0003548835 -0.027182284 0.056680191 7.333450 10 1.254373 1.378069 0.0052440839 0.322883487 0.019305475 4.355195 11 1.254079 1.377769 -0.0141544574 8.407267343 0.010076272 11.916344 12 1.254043 1.377677 -0.0008944731 -1.262755476 0.008548232 2.066027 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 373.991 co2l1 = 0.393 co2l0 = -0.155" [1] "co2l0 = -142.53 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "27 out of 40 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "13 out of 98 1-min values rejected as stack air" [1] "13 out of 98 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"