[1] "2025-04-29 21:05:21 MDT" [1] "1404" "140420" "d110" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140420a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85903 63 [1] 85903 [1] 85903 [1] "testing skipping spike filter" [1] 85903 [1] 85903 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:05:26 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.793, ave o2scale2 = 0.722" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "28 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.793, ave o2scale2 = 0.722" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "30 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:05:26 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:05:26 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:05:40 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:05:42 MDT" [1] "reading in recalculated plot titles" [1] "Removed 30 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 2 row(s) with low FLSP" [1] "Removed 1284 row(s) with high PFRIDGE" [1] "TEMP: 113 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:05:46 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.9" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.394 co2off = 369.65 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.01 minutes" [1] "Average Cal: 66.31 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 299.54 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 8 [5,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 6 14 0.0184434 0.02400718 0.02192097 2 77.131705 130.6186 3 2 15 32 0.0247026 0.23271782 0.14166779 2 7.242176 271.8051 4 4 33 42 0.2334133 0.23967705 0.23723958 2 77.066727 130.2751 5 3 43 51 0.2403725 0.24593631 0.24524073 2 53.089393 212.0192 6 4 52 60 0.4358695 0.44143365 0.43934718 2 77.053429 131.3630 7 2 61 78 0.4421290 0.65011227 0.55907608 2 7.112855 271.4530 8 4 79 87 0.6508079 0.65637153 0.65428509 2 77.137330 129.3147 9 3 88 95 0.6654167 0.67028521 0.66993751 2 53.092698 208.1124 10 4 96 104 0.8532238 0.85879117 0.85670456 2 77.291857 130.0709 11 2 105 113 0.8594866 0.86505093 0.86296420 2 7.111777 270.0372 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.256498 1.380607 -0.0083341856 1.63265118 0.020987525 3.7477801 3 1.258523 1.382752 -0.0010085474 -0.00157016 0.152353188 4.4908059 4 1.259871 1.384198 0.0081369858 0.55940710 0.025071949 2.3799282 5 1.260115 1.384325 -0.0008200151 -1.84491041 0.006590487 1.8597900 6 1.262273 1.386880 -0.0040850773 2.72908380 0.009811400 6.4797219 7 1.263340 1.388009 0.0001467378 -0.01149611 0.024939037 4.6469910 8 1.264034 1.388722 -0.0010899507 0.59514374 0.007530469 3.3305747 9 1.263961 1.388652 0.0035646840 -0.24851823 0.009775081 0.1759706 10 1.264920 1.389702 -0.0033867951 -0.40298968 0.007376387 2.1411539 11 1.264985 1.389706 0.0068902925 0.01064831 0.016148959 4.3434403 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 374.102 co2l1 = 0.39 co2l0 = 0" [1] "co2l0 = -142.45 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 3 1-min values rejected as stack air" [1] "0 out of 3 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"