[1] "2025-04-29 21:04:51 MDT" [1] "1404" "140419" "d109" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140419a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85500 63 [1] 85500 [1] 85500 [1] "testing skipping spike filter" [1] 85500 [1] 85500 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:04:55 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.802, ave o2scale2 = 0.73" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.802, ave o2scale2 = 0.73" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:04:56 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:04:56 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:05:11 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:05:12 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1424 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:05:17 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.9" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.402 co2off = 373.59 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.06 minutes" [1] "Average Cal: 8.87 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.09 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 246 254 0.1751311 0.1806956 0.1786089 2 76.410027 131.1974 1.238891 3 2 255 263 0.1813912 0.1869560 0.1848693 2 8.058571 267.0762 1.239027 5 2 546 555 0.3839734 0.3902431 0.3878015 3 7.979828 276.9100 1.244080 6 4 556 565 0.3909424 0.3972291 0.3947853 3 76.508930 126.1200 1.244114 7 5 566 575 0.3979272 0.4042073 0.4031621 NA 49.037875 187.7356 1.244243 8 3 576 585 0.4049063 0.4111959 0.4101472 3 53.007383 211.8692 1.244385 10 4 844 853 0.5924644 0.5987707 0.5963183 2 76.734969 127.1522 1.248822 11 2 854 863 0.5994714 0.6057789 0.6033261 2 7.849695 276.8661 1.249250 13 2 1142 1151 0.8013634 0.8076694 0.8052169 3 7.470633 273.0504 1.253185 14 4 1152 1161 0.8083704 0.8146767 0.8122241 3 76.963648 127.0601 1.253266 15 3 1162 1171 0.8153782 0.8216878 0.8206369 3 53.115172 206.4218 1.253560 jfcv2 co2slp o2slp co2sd o2sd 2 1.361210 8.474866e-03 2.8672779 0.023184576 6.3219026 3 1.361442 -1.753908e-03 1.5079230 0.011716843 4.8203461 5 1.366882 5.692407e-03 1.7925750 0.014595236 4.9950137 6 1.366918 4.367395e-03 -0.4969387 0.016290178 2.9270986 7 1.367059 -3.438538e-02 -0.7632123 0.024395184 1.0088326 8 1.367217 1.532644e-03 -1.9061598 0.005723292 3.6660436 10 1.371982 -4.681141e-03 1.2322984 0.012101090 4.5255856 11 1.372450 -1.268433e-05 0.4358944 0.004865425 2.6253378 13 1.376617 -3.228271e-03 1.6669184 0.014209900 4.6621380 14 1.376712 4.813902e-03 1.2048111 0.022339705 5.3402653 15 1.377037 -6.818717e-03 -0.5377193 0.018012884 0.9414645 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 373.498 co2l1 = 0.401 co2l0 = -0.175" [1] "co2l0 = -141.71 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "18 out of 30 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "12 out of 1284 1-min values rejected as stack air" [1] "12 out of 1284 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"