[1] "2025-04-29 21:04:35 MDT" [1] "1404" "140418" "d108" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140418a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 75540 63 [1] 75540 [1] 75540 [1] "testing skipping spike filter" [1] 75540 [1] 75540 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:04:38 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.813, ave o2scale2 = 0.739" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "48 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.813, ave o2scale2 = 0.739" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "48 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:04:39 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:04:39 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:04:43 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:04:44 MDT" [1] "reading in recalculated plot titles" [1] "Removed 48 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 2 row(s) with variable TFCELL" [1] "TEMP: 1208 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:04:46 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.1" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.9" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.409 co2off = 368.53 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.6 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 3 4 267 276 0.3408052 0.3470648 0.3446307 2 75.768180 117.4876 1.227553 4 2 277 286 0.3477604 0.3540197 0.3515854 2 8.738297 256.1100 1.227567 6 2 565 574 0.5495163 0.5557759 0.5533418 3 8.690055 268.0840 1.230762 7 4 575 584 0.5564713 0.5627310 0.5602966 3 75.925164 131.4497 1.230794 8 3 585 594 0.5634265 0.5696854 0.5686423 3 52.867570 207.6855 1.230929 10 4 865 874 0.7581850 0.7644438 0.7620098 2 76.285766 128.4670 1.233550 11 2 875 883 0.7651391 0.7707034 0.7686168 2 8.342464 272.2324 1.233761 14 2 1161 1170 0.9668527 0.9731119 0.9706776 3 8.197359 276.1700 1.236017 15 4 1171 1180 0.9738068 0.9800671 0.9776327 3 76.326078 129.2442 1.235985 16 3 1181 1190 0.9807627 0.9870255 0.9859812 3 52.971602 210.1473 1.236191 jfcv2 co2slp o2slp co2sd o2sd 3 1.349122 0.0125526396 6.2672000 0.033141462 16.595740 4 1.349145 -0.0006374687 7.8235493 0.014405587 20.481502 6 1.352397 0.0055014172 3.4172022 0.020223126 9.499284 7 1.352375 0.0138953088 3.0897095 0.037700668 14.692100 8 1.352570 -0.0008583148 -4.1080448 0.009183851 5.555503 10 1.355382 0.0019494839 -0.4384319 0.005067045 3.449211 11 1.355534 0.0064538992 2.8938083 0.014963839 7.054517 14 1.358068 -0.0030891065 1.8524455 0.008729936 4.790158 15 1.358046 0.0082809822 2.0141262 0.022484885 5.135441 16 1.358274 -0.0021462252 1.2577681 0.006010402 2.259247 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 373.173 co2l1 = 0.409 co2l0 = -0.187" [1] "co2l0 = -142.22 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "3 out of 75 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "72 out of 1028 1-min values rejected as stack air" [1] "72 out of 1028 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"