[1] "2025-04-29 21:03:02 MDT" [1] "1404" "140412" "d102" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140412a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85860 63 [1] 85860 [1] 85860 [1] "testing skipping spike filter" [1] 85860 [1] 85860 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:03:06 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.818, ave o2scale2 = 0.745" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "34 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.818, ave o2scale2 = 0.745" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "34 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:03:06 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:03:06 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:03:22 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:03:24 MDT" [1] "reading in recalculated plot titles" [1] "Removed 35 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1395 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:03:28 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.1" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.9" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.404 co2off = 367.96 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.58 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 22 31 0.01643562 0.02269560 0.02026129 2 78.190500 122.6161 3 2 32 38 0.02339109 0.02965041 0.02700742 2 9.536781 282.2327 5 2 303 312 0.22512847 0.23138799 0.22895358 3 9.594617 276.3405 6 4 313 322 0.23208333 0.23834320 0.23590875 3 78.002953 127.8960 7 5 323 332 0.23903863 0.24529780 0.24425472 NA 50.308875 195.2223 8 3 333 342 0.24599317 0.25225324 0.25121000 3 54.537180 218.4651 10 4 595 602 0.43383435 0.43870269 0.43696381 2 77.964167 134.3022 11 2 603 611 0.44148492 0.44704878 0.44496209 2 9.572705 275.2317 13 2 882 890 0.64195486 0.64751858 0.64543201 3 9.411955 260.9672 14 4 891 899 0.64821403 0.65377778 0.65169121 3 77.950277 127.2308 15 3 900 908 0.65447323 0.66003707 0.65934171 3 54.443938 193.7861 17 4 1181 1190 0.85063304 0.85689230 0.85445795 2 77.729789 131.8904 18 2 1191 1200 0.85758770 0.86384722 0.86141312 2 9.465266 277.5011 19 5 1201 1210 0.86454282 0.87080220 0.86975913 NA 50.135281 196.0517 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.219994 1.340178 0.0002434436 1.19779144 0.012291838 7.260527 3 1.220007 1.340092 -0.0002074648 4.29036847 0.006548103 13.717870 5 1.219150 1.339263 -0.0025800517 0.88129696 0.006919776 4.671516 6 1.219179 1.339348 0.0053343093 0.69556576 0.015065695 5.132589 7 1.219351 1.339526 -0.0299588066 -0.06275526 0.021213203 1.510773 8 1.219324 1.339523 -0.0049574706 -1.13737070 0.013236492 3.290651 10 1.221868 1.342369 -0.0016253739 0.71384421 0.015443884 4.011303 11 1.222100 1.342661 -0.0059099199 -0.23681136 0.016394181 2.263008 13 1.225598 1.346429 0.0045444338 -0.50770710 0.011927063 10.149720 14 1.225377 1.346110 0.0083200826 2.73661472 0.020732983 6.708570 15 1.225397 1.346336 -0.0073151582 1.55945885 0.015979235 5.215101 17 1.225468 1.346283 -0.0027302936 0.68536376 0.007513376 2.594444 18 1.225351 1.346182 -0.0102846644 -0.02883709 0.025950669 2.919768 19 1.225165 1.345988 -0.0357648136 -1.49597458 0.025323262 2.249223 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.8 co2l1 = 0.403 co2l0 = -0.206" [1] "co2l0 = -141.86 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "25 out of 125 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "100 out of 1212 1-min values rejected as stack air" [1] "100 out of 1212 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"