[1] "2025-04-29 21:01:54 MDT" [1] "1404" "140410" "d100" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140410a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:01:58 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.809, ave o2scale2 = 0.737" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "13 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.809, ave o2scale2 = 0.737" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "13 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:01:59 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:01:59 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:02:16 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:02:18 MDT" [1] "reading in recalculated plot titles" [1] "Removed 13 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1423 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:02:25 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.1" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.9" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.393 co2off = 377.96 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.61 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 198 205 0.1394865 0.1443550 0.1426163 3 8.994427 271.9285 1.243750 3 4 206 214 0.1450509 0.1513102 0.1487268 3 80.543319 113.2519 1.243515 4 3 215 224 0.1520055 0.1582651 0.1572219 3 55.984016 211.6490 1.243470 6 4 492 501 0.3467870 0.3530463 0.3506120 2 80.231133 131.7937 1.239421 7 2 502 511 0.3537419 0.3600012 0.3575670 2 9.090500 271.8836 1.239360 8 5 512 521 0.3607003 0.3669595 0.3659164 NA 53.380375 204.7272 1.239095 10 2 791 800 0.5554554 0.5617147 0.5592805 3 9.456242 277.0491 1.234763 11 4 801 810 0.5624099 0.5686690 0.5662350 3 79.838461 125.1063 1.234426 12 3 811 819 0.5693646 0.5756242 0.5749288 3 55.656667 206.8632 1.233969 14 4 1089 1095 0.7662442 0.7704170 0.7690261 2 79.438500 132.0480 1.229012 15 2 1096 1105 0.7711123 0.7773754 0.7749383 2 9.608813 273.6978 1.228821 17 2 1385 1394 0.9728571 0.9791168 0.9766823 3 9.538727 271.9183 1.226224 18 4 1395 1404 0.9798122 0.9860752 0.9836377 3 79.212789 126.7300 1.225949 19 5 1405 1414 0.9867707 0.9930298 0.9919866 NA 52.625625 193.6966 1.225754 20 3 1415 1423 0.9937253 0.9992894 0.9985938 3 55.302420 210.0261 1.225665 jfcv2 co2slp o2slp co2sd o2sd 2 1.365089 3.720760e-03 -7.4397777 0.007136768 21.0260810 3 1.364750 5.557319e-03 -6.4151147 0.016693640 19.7374710 4 1.364851 -7.528258e-06 -3.0274244 0.005745704 10.2775308 6 1.360655 -4.028563e-03 2.2685989 0.012091792 6.1150743 7 1.360580 -1.482868e-03 1.8649907 0.013860715 6.2519773 8 1.360287 -2.745881e-03 -1.4831583 0.001944544 3.4788998 10 1.355811 -3.507249e-03 1.6099204 0.012063746 10.8334851 11 1.355468 3.084140e-04 -0.4686088 0.010186921 4.2378767 12 1.354999 -1.169603e-03 1.2185827 0.006498472 4.0207560 14 1.349672 -1.099028e-02 -0.5821728 0.017594999 10.5609368 15 1.349431 -4.503045e-03 -1.9723478 0.011403222 13.9865455 17 1.346729 -8.011649e-03 3.5702156 0.020172248 9.7224756 18 1.346432 2.003472e-03 6.6107272 0.016690591 16.7958469 19 1.346227 8.238672e-03 -0.7097632 0.005833631 1.2774260 20 1.346037 -2.043771e-03 -0.5004265 0.004528227 0.7339125 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.99 co2l1 = 0.392 co2l0 = -0.205" [1] "co2l0 = -141 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "349 out of 560 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "211 out of 1234 1-min values rejected as stack air" [1] "211 out of 1234 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"