[1] "2025-04-29 21:01:17 MDT" [1] "1404" "140409" "d099" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140409a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 21:01:21 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.801, ave o2scale2 = 0.729" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.801, ave o2scale2 = 0.729" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 21:01:21 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 21:01:21 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 21:01:42 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 21:01:44 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1436 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 21:01:49 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476.1" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.9" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.384 co2off = 373.18 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 135 144 0.09459552 0.1008553 0.09842078 2 81.752656 127.6667 3 2 145 154 0.10155052 0.1078102 0.10537590 2 9.215055 270.2142 4 5 155 164 0.10850561 0.1147652 0.11372216 NA 54.207063 194.4483 6 2 435 444 0.30328507 0.3095484 0.30711245 3 9.209656 271.2398 7 4 445 454 0.31024381 0.3165035 0.31406895 3 81.534141 127.5073 8 3 455 464 0.31719907 0.3234585 0.32241510 3 56.730102 216.6907 10 4 735 744 0.51198955 0.5182484 0.51581429 2 81.216805 120.9069 11 2 745 754 0.51894389 0.5252037 0.52276944 2 9.251008 270.2216 13 2 1035 1044 0.72070718 0.7269668 0.72453240 3 9.209906 273.4481 14 4 1045 1054 0.72766212 0.7339213 0.73148731 3 80.897188 134.3887 15 5 1055 1064 0.73461690 0.7408762 0.73983280 NA 53.667719 186.0815 16 3 1065 1074 0.74157176 0.7478345 0.74679080 3 56.303500 210.5135 18 4 1335 1344 0.92939074 0.9356563 0.93321888 2 80.824625 134.7278 19 2 1345 1354 0.93635185 0.9426148 0.94017848 2 8.991422 276.9156 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.252705 1.375014 -0.0003344833 0.6266685 0.013209296 6.156019 3 1.252645 1.374964 0.0058672232 2.9288608 0.014896460 7.941084 4 1.252662 1.374931 0.0003745007 2.0086928 0.000265165 2.616366 6 1.250207 1.372415 -0.0055737891 2.1362999 0.015176933 5.584906 7 1.249906 1.372070 0.0076362589 0.4612042 0.023418141 3.809370 8 1.249801 1.371958 -0.0006127563 -0.4828985 0.005346471 3.081432 10 1.248629 1.370611 0.0006931887 -0.3986158 0.005334297 10.159530 11 1.248925 1.370960 -0.0093589546 1.1093862 0.024985229 4.740727 13 1.246808 1.368640 0.0033283976 -1.5578797 0.008276270 6.545365 14 1.246568 1.368356 0.0042470787 2.3571547 0.018455303 8.299169 15 1.246450 1.368206 -0.0016846922 -2.3323092 0.001193243 3.027123 16 1.246297 1.368056 -0.0056791323 -2.8402107 0.015146900 4.191205 18 1.246687 1.368472 -0.0050338252 1.0126859 0.012976885 4.238050 19 1.246641 1.368441 -0.0025163925 1.1781049 0.016159907 6.671995 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 373.123 co2l1 = 0.383 co2l0 = -0.19" [1] "co2l0 = -142.4 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "18 out of 20 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "2 out of 1244 1-min values rejected as stack air" [1] "2 out of 1244 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"