[1] "2025-04-29 20:57:10 MDT" [1] "1403" "140329" "d088" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140329a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 39227 63 [1] 39227 [1] 39227 [1] "testing skipping spike filter" [1] 39227 [1] 39227 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:57:12 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.806, ave o2scale2 = 0.734" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "12 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.806, ave o2scale2 = 0.734" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "12 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:57:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:57:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:57:21 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:57:22 MDT" [1] "reading in recalculated plot titles" [1] "Removed 13 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 640 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:57:24 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.9" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.419 co2off = 370.31 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 103 112 0.07147205 0.07773148 0.07529691 2 81.24241 131.3156 3 2 113 122 0.07842705 0.08468614 0.08225180 2 15.29354 269.0931 4 5 123 132 0.08538113 0.09164051 0.09059746 NA 55.78053 181.7243 6 2 398 407 0.28017824 0.28643756 0.28400337 3 15.14866 273.6051 7 4 408 417 0.28713333 0.29339300 0.29095849 3 81.15758 130.2028 8 3 418 427 0.29408837 0.30035139 0.29930734 3 58.52163 208.6207 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.239937 1.362184 -0.002046645 1.0380709 0.006923364 4.2561943 3 1.240255 1.362523 -0.002230835 0.8638410 0.008719202 2.6095208 4 1.240447 1.362722 0.009174885 -0.7994144 0.006496544 2.5410623 6 1.240056 1.362274 -0.006803664 0.9478410 0.017798099 3.5517165 7 1.239975 1.362190 0.008213381 0.6946785 0.022927724 2.6430574 8 1.240047 1.362273 -0.001778121 -0.3341416 0.009834707 0.4393639 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 370.271 co2l1 = 0.419 co2l0 = -0.326" [1] "co2l0 = -143.28 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "44 out of 198 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "154 out of 548 1-min values rejected as stack air" [1] "154 out of 548 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"