[1] "2025-04-29 20:56:05 MDT" [1] "1403" "140327" "d086" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140327a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:56:09 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.817, ave o2scale2 = 0.744" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.817, ave o2scale2 = 0.744" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:56:10 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:56:10 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:56:28 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:56:29 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1436 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:56:32 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.9" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.422 co2off = 369.71 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 277 286 0.1933035 0.1995671 0.1971312 3 16.97748 271.8992 1.217532 3 4 287 296 0.2002627 0.2065225 0.2040881 3 81.94862 127.9143 1.217661 4 5 297 306 0.2072180 0.2134815 0.2124381 NA 55.71988 187.5805 1.217952 5 3 307 316 0.2141769 0.2204451 0.2193996 3 59.65961 215.3554 1.218170 7 4 577 586 0.4019905 0.4082535 0.4058169 2 81.98345 130.3204 1.223126 8 2 587 596 0.4089491 0.4152083 0.4127742 2 16.68878 273.5047 1.223325 10 2 877 886 0.6106817 0.6169444 0.6145097 3 16.32748 272.1369 1.227370 11 4 887 896 0.6176400 0.6238995 0.6214651 3 82.04642 127.7846 1.227510 12 3 897 906 0.6245949 0.6308548 0.6298115 3 59.48766 208.6466 1.227734 14 4 1177 1186 0.8193576 0.8256169 0.8231827 2 82.07111 129.3374 1.229903 15 2 1187 1196 0.8263125 0.8325717 0.8301374 2 15.99888 271.6624 1.230027 16 5 1197 1206 0.8332672 0.8395300 0.8384851 NA 56.41394 185.3634 1.229939 jfcv2 co2slp o2slp co2sd o2sd 2 1.337725 -0.0009200183 0.9140825 0.006085967 4.5839961 3 1.337890 0.0064287559 1.6205160 0.021114918 4.3211810 4 1.338187 -0.0576539101 0.1060977 0.040835417 0.1888938 5 1.338439 0.0012025191 -0.6389522 0.010950872 1.0506368 7 1.343735 -0.0088506810 1.4232224 0.022984332 4.0262791 8 1.343972 -0.0002241515 1.2063276 0.008970686 4.4366430 10 1.348379 0.0031360562 -0.8986838 0.008795033 3.0044870 11 1.348548 -0.0022511838 1.4164675 0.012585145 4.1090239 12 1.348806 -0.0043045642 -0.4484046 0.011041568 1.0068467 14 1.351157 0.0029494528 2.0094516 0.008688415 6.0445958 15 1.351287 -0.0006677558 1.7379849 0.008285532 4.5572851 16 1.351210 -0.0058664448 -0.1079573 0.004154252 0.4249752 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 369.689 co2l1 = 0.422 co2l0 = -0.368" [1] "co2l0 = -142.32 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "21 out of 74 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "53 out of 1269 1-min values rejected as stack air" [1] "53 out of 1269 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"