[1] "2025-04-29 20:55:01 MDT" [1] "1403" "140325" "d084" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/140325a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 20:55:05 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.822, ave o2scale2 = 0.749" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "51 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.822, ave o2scale2 = 0.749" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "51 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 20:55:05 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 20:55:05 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 20:55:25 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 20:55:26 MDT" [1] "reading in recalculated plot titles" [1] "Removed 51 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1385 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 20:55:30 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.62 O2 = -476" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.98 O2 = -541.9" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.22 O2 = -634" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.09 O2 = -572.2" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.42 co2off = 364.16 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 123 131 0.1065729 0.1128322 0.1104477 3 18.13355 274.2161 1.218558 3 4 132 141 0.1135278 0.1197976 0.1173602 3 84.61804 130.9849 1.219151 4 3 142 151 0.1204931 0.1267524 0.1257091 3 61.82812 202.8273 1.219917 6 4 422 431 0.3153345 0.3215942 0.3191597 2 84.40216 130.3278 1.222704 7 2 432 441 0.3222896 0.3285487 0.3261148 2 17.92724 271.4984 1.222784 8 5 442 451 0.3292442 0.3355177 0.3344748 NA 57.29175 195.4441 1.222867 10 2 722 731 0.5240305 0.5302952 0.5278574 3 18.02984 272.8020 1.219018 11 4 732 741 0.5309907 0.5372500 0.5348156 3 83.87520 129.3648 1.218498 12 3 742 751 0.5379456 0.5442049 0.5431617 3 61.30257 207.7473 1.218183 14 4 1017 1026 0.7327317 0.7389908 0.7365569 2 83.48738 128.7256 1.212673 15 2 1027 1035 0.7396863 0.7459456 0.7435614 2 18.12483 271.9078 1.212201 18 2 1302 1311 0.9414058 0.9476689 0.9452316 3 18.21170 271.0524 1.204248 19 4 1312 1321 0.9483643 0.9546271 0.9521910 3 82.89995 129.4368 1.204072 20 5 1322 1331 0.9553225 0.9615852 0.9605421 NA 56.44672 195.7550 1.203878 21 3 1332 1341 0.9622805 0.9685403 0.9674970 3 60.62859 210.4370 1.203618 jfcv2 co2slp o2slp co2sd o2sd 2 1.338196 -0.0003818302 1.76477300 0.010376469 6.241224 3 1.338881 0.0050699324 0.56535789 0.017678488 3.146043 4 1.339651 -0.0064441601 -0.26039618 0.017474325 1.347507 6 1.342884 0.0068571978 2.30361559 0.017065754 5.975881 7 1.342997 -0.0001986827 0.97700229 0.011278013 3.319452 8 1.343078 -0.0429677742 -0.73102681 0.030405592 1.458135 10 1.338815 -0.0080305398 2.00495833 0.020115097 5.806536 11 1.338251 0.0084334026 1.93319333 0.025073102 5.843695 12 1.337886 0.0016323538 1.66739200 0.006589226 2.339041 14 1.332126 -0.0058080947 1.80797100 0.016844232 5.763340 15 1.331545 -0.0068305884 0.40086144 0.020062064 4.875945 18 1.323096 0.0030890399 -0.81841858 0.008799759 4.162984 19 1.322899 -0.0042256280 0.03259577 0.016528748 3.102781 20 1.322695 -0.0491199601 -0.89030887 0.034780815 1.528676 21 1.322429 -0.0055445678 1.19975584 0.014490376 2.296568 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 369.051 co2l1 = 0.42 co2l0 = -0.403" [1] "co2l0 = -142.59 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "45 out of 230 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "185 out of 1178 1-min values rejected as stack air" [1] "175 out of 970 Line 1 1-min values rejected as stack air" [1] "10 out of 208 Line 2 1-min values rejected as stack air" [1] "untarring JGOFS directory for this cruise" [1] "making html"